Parastagonospora nodorum: SNOG_08240 Help Entry SNOG_08240        CDS       T01161                                  Name (RefSeq) hypothetical protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism pno  Parastagonospora nodorum Pathway pno03018   RNA degradation Brite KEGG Orthology (KO) [BR:pno00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     SNOG_08240  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pno03019]     SNOG_08240 Enzymes [BR:pno01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      SNOG_08240 Messenger RNA biogenesis [BR:pno03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      SNOG_08240   mRNA degradation factors    3'-5' decay     Ski complex      SNOG_08240 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk Helicase_C ResIII DEXQc_Suv3 Ski2_beta-barrel Motif Other DBs NCBI-GeneID:  5975460 NCBI-ProteinID:  XP_001798562 UniProt:  Q0UJ24 A0A7U2ETU6 LinkDB All DBs Position Unknown AA seq 1288 aa AA seqDB search MEALSAELDKLRLSTSALSDPGWIDSIAAEQRPPKRQRKTKHTIKKELEAEFLTPSRSFN TQWLNQLQQRWDAPTNYRSLCQIAPTQTRTIIRFTREGLEGRVTGYKEVTVPANSATAKN STSLLRKPANRAEFVRGAAGFFPFAPGGLDGVEAIAAREDEAIVQQEKASAKAGGGLDRV INFSDPTGLLAIPPGFTRGLDFQKKLLPDAKITKEVEDTLGEASAVNKSSEDDDDEGSND DRNGGAAAGEDGQTPMEEEIDALLPVEFPALAPHGPLAMAASRKKGREWAHMVDINRDIT NFRELVPDMAREYPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMT KAIYTSPIKALSNQKFRDFRLTFDDVGILTGDVQIRPEASCLIMTTEILRSMLYRGADLI RDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKD IYVISTPKRPIPLEHYLWAGKGMYKIVTADKKFIDNGWKEANDVMSGKDKVKAPVTKEAP TGRGGGGGGGGRGGPAARGGQNQRGRGQQNGGRGGAQRGGGPPAQRGRGNIARTGRGGGR TTAAQDRNIWVHLIQFLRSKDLLPACIFVFSKKRCEENAEALSNIDYCTAAEKSAIHMTI EKSLARLSPEDRDLPQIKRLRELLSRGIAVHHGGMLPIVKEVVEILFAKTLVKVLFATET FAMGLNLPTRTVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRGLDSVGTVIVCAPGADE APPAARLRQMMLGEPTKLRSQFRLTYNMMLNLLRVEALKIEEMIKRSFSENATQALLPEH EKNVKVSEADLEKIKREPCEICDIDLEACHQSCEDYKRLTNEMHLSLLVDPVGRRVLSRN RLIVYKKDNKRTAGMLMQDGTSRGNEPTIKVLEIAQNEDRKADDLLPYLGPFAKFFRNLP KSPKDLILKTAFVPLNDIECFTKTTIDVPESVQNLNRKKDTLKLAQDQFLPLCQSWNYED WDEYDYSRIKSMKFRELMETRVKEGQNAVDKKCLECPDFLKHFEMEHDQWVIKENILSLR QLMSDQNLQLLPDYEQRIRVLQDLGFIDGGSRVELKGKVACEIHSADELVLTELVLENVL ADYTPEEIVSLLSAFVFQEKTDTEPTLTASLERGVAAIVKISEKVNEIQTLHQVILSADD SNDFVSKPRFGMVEVVYEWARGMSFNRITDLTDVMEGTIVRVITRLDETCREVKNAARII GDPVLFQKMGTCQELIKRDICNCASLYL NT seq 3867 nt NT seq  +upstreamnt  +downstreamnt atggaggctctgtccgcagagctcgataagcttcggctgagcaccagtgcactcagcgac cccggctggatagattccattgcagccgagcagcggccgccgaagcgacagcgcaaaacc aaacataccatcaagaaagagctcgaggcagaatttctgacgccatcacggtccttcaac acgcaatggttgaaccagctacagcaacgttgggatgctccaaccaactaccgcagcctg tgtcagattgcgccgactcagactcgcaccatcatccgcttcactcgcgaaggactggaa ggccgtgtgacagggtataaagaggtcaccgttcctgccaactcggcgacagcgaaaaac tccacttccttgctgaggaagcctgccaacagagctgagttcgtccgcggtgctgctggc tttttccccttcgcacctggtggcctcgatggtgtcgaagcaattgctgcaagagaagat gaagcaattgtgcaacaagaaaaggccagcgccaaggcaggtggcggcctcgaccgagtc atcaatttcagcgacccgactggtctgcttgctattcctccaggcttcacccgtggattg gacttccagaagaagctactaccggatgccaaaataacaaaagaggttgaagacactcta ggagaggcgtcagcagtcaacaaatccagcgaagatgacgatgatgaaggctccaacgat gatcgcaacggtggcgctgcagcgggagaagatggtcaaactcctatggaggaagaaatt gatgctcttctccccgtcgagttccctgcgctagctcctcatggacctctggccatggct gcttccaggaagaaaggccgcgaatgggctcacatggtggatattaaccgcgacatcact aacttccgagaactcgttccggatatggctcgtgagtatccttttgagctcgataccttt caaaaggaggccgtgtaccacctcgagaatggtgactcagttttcgttgctgcacacacc tctgctggaaagactgtggttgcagagtacgccattgcactggctgccaagcatatgacc aaggctatctacacatctcctatcaaagctttgagcaaccagaagttccgcgactttcgg ctcacatttgatgatgtcggtatcttaactggagatgtgcagatacgaccagaggcaagt tgtcttatcatgactaccgagattcttcgcagcatgctgtaccgtggagcagacttgatc agagacgtggaatttgtcatctttgacgaggttcactatgtcaatgatcttgagcgaggt gtggtctgggaagaggtgatcattatgcttccagagcatgttactctcatcctgctatca gcgacggtccccaacacttatgagttcgcatcatgggtcggaaggacgaaaaagaaggat atctacgtcatctccacgcccaagcgccccatcccgctcgaacactatctctgggctggc aaaggcatgtacaaaattgtcaccgcggacaagaaattcatcgataatggctggaaagag gccaacgatgtcatgtctggtaaggacaaggtcaaagctccagtgacgaaggaagctcct acgggcagaggaggcggcggcggcggcggcggtcgaggtggcccggctgcaaggggcgga caaaaccaacgaggtcgcggccaacaaaatggcggtcgtggtggcgcacagcgtggtgga ggtccaccagcccagcgaggtcggggcaacatagctcgcacgggccgtgggggtggtcga acaaccgctgcccaggaccgcaacatatgggtgcatctcatccaattcctccgaagcaaa gatctgttaccagcatgtatcttcgtcttctcgaagaagcgctgcgaggaaaacgccgaa gcactctcaaatatcgactactgtactgctgccgagaagagtgcgattcacatgacaatc gaaaagtcgctggccaggcttagcccagaagaccgagatctgcctcagatcaagcgactg agagaattgctaagccgaggaattgctgttcaccatggtggtatgcttccaattgtcaag gaggtggtcgaaatcctgttcgccaagacgctcgtgaaggtgctgttcgccacagagacc ttcgctatgggcctgaatctccccaccaggaccgttgtgttttctggtttccgcaaacac gatggccgtgaattccgtgacttgcttccaggcgagtacacccagatggctggtcgtgcc ggacgaagaggtctcgactctgtcggcactgtcatcgtgtgcgcaccaggagctgatgaa gccccaccagccgcacgtttgaggcagatgatgctgggtgagcccacaaagctgagatca caattccgactcacatacaacatgatgctcaatctgctacgtgtcgaagccctcaagatt gaagaaatgattaagcgcagctttagtgaaaatgcgacacaagcattgcttcctgagcat gaaaagaacgtcaaggtttccgaggcagacttggagaagatcaagcgtgagccgtgtgag atttgcgatatcgatctggaagcatgccatcaatcatgcgaggactataagcgcctcacc aatgagatgcatctcagtctgcttgttgaccctgtaggacggcgggtgctgagtcggaac agactcattgtatacaagaaggacaataaacggacagccggcatgctcatgcaagatggt accagtcggggtaacgagcctaccatcaaagtactggagattgctcaaaacgaagatcgt aaagcagacgatctattgccgtaccttggtccattcgcaaagttcttccgaaaccttccg aagagccccaaggacctgatcctcaagactgctttcgtcccactcaatgacattgagtgc ttcaccaagactactatcgacgtccctgagtctgtgcagaatctcaacagaaagaaagac acgctgaagctggctcaagaccagttcttgcctctgtgccaatcgtggaactatgaagac tgggatgagtacgactacagccgcatcaagagcatgaagttccgcgagttgatggagacg agggtgaaagagggccagaatgctgttgacaagaagtgtctagagtgtcctgatttcttg aagcactttgagatggagcatgaccaatgggttatcaaggagaatatcctttcacttcga cagctgatgtcggatcaaaatctccagcttctgcctgattacgagcagagaatccgagta ttgcaagacctaggcttcattgatggaggttcacgggtagagctcaagggcaaagtagct tgcgaaattcattccgccgatgaactcgttctgactgaactcgttctcgaaaacgtctta gcagactacacccccgaagaaatcgtctccctactctccgccttcgtctttcaagagaag accgatacggagcccacactgaccgctagcctcgagcgcggcgtcgccgcgatcgtcaaa atctccgagaaagtaaatgaaatccagactctgcatcaggtcattctatctgcggacgac tccaacgacttcgtcagcaagccgcgcttcggcatggtagaggttgtctacgaatgggcc cgcggcatgtcttttaatagaatcaccgacctgacggatgtcatggaaggcacgatagtc agagtgattaccagactcgacgagacgtgcagggaagtgaagaacgcggcgcggatcatc ggcgacccggtcctgtttcagaagatggggacgtgccaggaacttatcaaaagggatatc tgcaactgcgcgagcttgtacctataa

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