Parastagonospora nodorum: SNOG_13712
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Entry
SNOG_13712 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K15542
polyadenylation factor subunit 2
Organism
pno
Parastagonospora nodorum
Pathway
pno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SNOG_13712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pno03019
]
SNOG_13712
Messenger RNA biogenesis [BR:
pno03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SNOG_13712
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_Gbeta
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR19_1st
ASA1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_NOL10_N
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
MIOS_WD40
PEP5_VPS11_N
Beta-prop_WDR41
NBCH_WD40
eIF2A
Beta-prop_NUP159_NUP214
WDR54
CFAP251_N
Beta-prop_HPS5
Beta-prop_VPS8
PAC11
Beta-prop_ACSF4
Nucleoporin_N
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
5980841
NCBI-ProteinID:
XP_001803919
UniProt:
Q0U3F2
LinkDB
All DBs
Position
Unknown
AA seq
585 aa
AA seq
DB search
MEREYHPRQFEDGPRPRPKLYKAGANPLHIGAVTDYGATTVQWMRNRRPRYKNVPMAEVE
RPTPSYVVDMTPPAARVSSAAESIPAKAVHSSLNKVKHPINVVKWTPEGRRLLTGSTSGE
FTLWNGMGFNFETIMQAHEAAIRCVEYTHTDDWLLSADQTGIVKYWQTNFNNVKEIQAHT
EAVRGLAIAPTDSKFVTCADDTTLKIWDFASSTEESTLTGHGWEVKCVDWHPHKGLLVSG
SKDHQVKFWDPRTGRCLTTLHGHKNPIAKTMFEPTQGHLLATCARDHIARIFDLRMMRDV
LLLKGHDKDIMSMTWHPMHKNLLSTGGYDGAILHHLLDEQNAPDDVPPSISPYDAADPQT
APAQTIYPAHTIKRAHEYTVWSMDWHPLGHILATGSNDRITRFWTRPRPGDTSYIKDRYH
IGDKAAEEEGTWDGRQGRRRRAEEEELEAEDEAEGLVDQKMPSKSSGMPGLPPGLSLPGL
SAAPDGFPGFPPPGMGVPPPPPNFQNGGPVGGQEGGDAGIRRRAPLPEQDDALKEEMRQG
RYRKARFYIDTWRSLTLFAESYIWSFSQKTCSIPKLQTLIHYLRV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcgaatatcaccctcgccagttcgaggacggccctcgaccgcgacctaagctc
tacaaagctggagctaacccgctgcacataggagcggtgactgattatggcgcgaccacg
gtgcaatggatgcgcaaccggcgaccgcgctacaagaatgtgcccatggctgaggtcgag
cggccaacccccagctatgtcgtggacatgacacccccagcagctcgagtctccagcgct
gccgaatcaattcctgccaaagccgtgcattcttctctcaacaaagtcaaacaccccatc
aatgtagtgaaatggacgccagagggccgacgactgctcacgggctctacaagtggagag
ttcacgctgtggaacggaatgggcttcaacttcgagaccatcatgcaggcccatgaggct
gccatccgctgcgtcgaatacacacacaccgacgactggctgctgtcagctgaccagacg
ggcatagtcaagtactggcagacaaacttcaacaacgtcaaggagatccaggcgcacaca
gaggcagtgcgggggctggccattgcaccgacagactccaagttcgtcacgtgtgccgac
gacacaacactgaagatctgggactttgcgtccagcacggaggagtcgacgctgacgggt
cacggctgggaggtcaagtgcgtggactggcatccgcacaaggggctgctagtatcaggg
tcaaaggatcaccaggtcaagttctgggatccgcggacaggtcgctgtctcacaacgctt
catggacataaaaacccaatagcaaagaccatgttcgagcctacccaaggacacctgcta
gcaacatgcgcccgtgatcacatcgctcgcatctttgacctccgcatgatgcgcgacgtt
ctcttgctaaaaggacatgacaaggacatcatgtccatgacatggcacccaatgcacaag
aacctgctgtccacgggcggctatgacggtgctatattacaccacctcctcgacgaacaa
aatgcacccgacgacgtgccaccctctatctccccctacgacgcggccgacccgcagacc
gcgcctgcgcaaaccatctaccccgcgcacaccatcaagagagctcatgaatacaccgtc
tggtccatggactggcacccactaggccacattcttgcgaccggtagtaacgaccgcatc
acacgcttctggacccgaccacgaccaggcgacacgagctacatcaaagaccgctaccac
attggcgacaaggcagccgaagaagaaggcacatgggatgggcgacagggccggcgacga
cgcgcagaggaagaagaactcgaagccgaagacgaggccgaaggtctggtcgatcagaag
atgccttccaagagctccggcatgcctggcttaccgcccggtctctccctaccaggtctt
tccgcagcaccagacggcttccctggtttccctcctccaggtatgggtgtgccgcccccg
ccgccgaatttccagaatggaggaccagtgggtggacaggagggcggggatgcagggatc
aggcggagagcgccgctgccggagcaggatgatgcgttaaaggaggagatgaggcaggga
cggtacaggaaagctagattctacatcgacacttggaggagtttgacactctttgctgag
tcatacatctggtccttctcacagaagacctgttcaataccaaagctccagaccctgatc
cactacctacgcgtctag
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integrated database retrieval system