Parastagonospora nodorum: SNOG_15623
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Entry
SNOG_15623 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pno
Parastagonospora nodorum
Pathway
pno03013
Nucleocytoplasmic transport
pno03015
mRNA surveillance pathway
pno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SNOG_15623
09122 Translation
03013 Nucleocytoplasmic transport
SNOG_15623
03015 mRNA surveillance pathway
SNOG_15623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pno03019
]
SNOG_15623
03041 Spliceosome [BR:
pno03041
]
SNOG_15623
Enzymes [BR:
pno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SNOG_15623
Messenger RNA biogenesis [BR:
pno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SNOG_15623
Spliceosome [BR:
pno03041
]
Complex C
Other components
EJC/TREX
SNOG_15623
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SNOG_15623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
5982697
NCBI-ProteinID:
XP_001805767
UniProt:
Q0TXZ2
A0A7U2HXD6
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQPTEVPANGDAAAAKGGLAAPDASGEKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHII
VGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSA
TLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDEREKNRKLNDLLDNLEFNQ
VIIFVRSTLRCTELDKLLRECNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEERFAA
EIPEFPEDGISSASYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgactactccgatgaggagatccagccaaccgaggtg
cccgccaacggcgacgcagcagctgcaaagggcggcctcgctgcgcccgacgcgtccggc
gagaagaagggcagctatgtcggcattcactccaccggtttccgcgacttcttgctgaag
gacgagctcgtgcgagccatcaccgactgcggattcgagcatccttccgaggtccagcaa
gttaccattccccaggctattctcggaaacgatgtcctctgccaggccaagtccggtctc
ggaaagactgctgtcttcgtccttgccaccctacagcaaatggacgagaagccagagccc
ggcgttgcctccatcctggttatgtgccatacccgtgagttggcttaccagatcaggaac
gagtacaaccgctttgccaagttcttgcccgatgtcaaggtcggcgtcttctacggcgga
accccagttgcgaaggacatcgagctcctcagcaacaaggacacccaccctcacatcatc
gtcggcaccccgggacgtatcaacgctctcgtccgtgacaggcaccttcgcctcgccaac
ttgaagcacttcgtcctcgatgagtgtgacaagatgctggaccagcctgacatgcgcaac
gacgtccaggcgatcttccgtgctacccccgcccacaagcaggtcatgatgttctcagcc
actctgtccaaggagatccgcgctgtctgcaagaagttcatgcagaaccccctggagatc
tacgtcgacgacgaaaagaagctgaccctgcacggtcttcagcaattctatgtcaagctt
gatgagcgcgagaagaacaggaagctcaacgacctcctcgataacctcgagttcaaccag
gtcatcatcttcgttcgctcaaccctgcgctgcaccgagctcgacaagctcctccgcgag
tgcaacttccctagcaccgcggtccactccggtatcggccaagaggagcgtatcaagcgc
tacaaggagttcaaggagttccagacccgtatctgtgtctcgactgatatcttcggtcgt
ggtatcgatgtcgagcgtatcaacgtcgctatcaactacgatatgcccgacaaggctgac
gcttacctccatcgtgtcggtcgtgctggtcgtttcggaaccaagggtctgagtatctca
ttcgtcagcagccaggacgatgaggctgtactcaaggccatcgaggagcgcttcgctgcc
gagatcccagagttccccgaggacggcatcagctctgccagctacatggacaactaa
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