Psychrobacter noctis: IEE84_12120
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Entry
IEE84_12120 CDS
T11785
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pnoc Psychrobacter noctis
Pathway
pnoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IEE84_12120 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnoc03021
]
IEE84_12120 (rho)
03019 Messenger RNA biogenesis [BR:
pnoc03019
]
IEE84_12120 (rho)
Transcription machinery [BR:
pnoc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IEE84_12120 (rho)
Messenger RNA biogenesis [BR:
pnoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IEE84_12120 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QOD12593
LinkDB
All DBs
Position
2899915..2901183
Genome browser
AA seq
422 aa
AA seq
DB search
MNLTELKKKSIAELLAIAKEMGLDNMARSRKQDIIFAILKTHARNGEAIYGDGVLEVLPD
GFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEIN
FDTPDRSRHKLIFENLTPLFPTEHLKLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPP
KAGKTMLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMVRTVRGEVVASTFDEPPQRHV
QVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVLTGGLDANALERPKRF
FGAARNVEEGGSLTIIASALIDTGSKMDSVIFEEFKGTGNQEITLERDLAEKRVFPAINI
KKSGTRREERLLDEDKLRKVWILRKLLQPMDGVQATEFLLDRLKEAKTNDEFFEQMKRKS
QN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaattaaagaaaaaatcaatcgctgagctattggctatcgccaaagaa
atgggtcttgataatatggcgcgtagccgtaaacaggacattatctttgctattctaaaa
acccatgcgcgtaacggtgaagccatctatggtgacggcgtacttgaggttcttcctgat
ggttttggatttttgcgctcatcagaaggctcatatttagccggtcctgatgatatttat
gtcagcccaagccagattcgccgtttcagtctaaaaactggtgacagtatcgctggtacg
attcgtccaccaaaagattctgagcgttattttgcattattaaaagttggcgaaatcaac
tttgatacgccagatcgttcacgtcataagcttatctttgagaacctgacgcccctattc
ccaactgagcatttaaaacttgagcttggtaacggaaccactgaagatttgactggtcgt
atcatcgatctaatcgctccgattggtaaaggtcagcgctctatcattgtcgcaccgcca
aaagcgggtaaaacgatgttgctacagaccatcgcgcaatcaattactcgtaataatcct
gaatgctatttgattgtactgttgattgatgagcgcccagaagaagtcaccgaaatggta
cgtacggtacgcggtgaagtggtcgcctctacctttgatgagccgccacagcgtcacgta
caagtcgctgaaatggtcatcgaaaaggccaaacgtttggttgaacacaagcaagacgtg
gtgattttacttgattcaattacgcgtctagcacgtgcttataatacggttatcccatca
tcaggcaaagtattgacgggtggtctagatgccaatgctctagaacgtccaaaacgtttc
tttggtgctgcgcgtaacgtggaagaaggtggtagtttgaccattattgccagtgcattg
attgatactggtagtaagatggacagcgttatttttgaagagtttaagggaacgggtaac
caagagattacgcttgagcgtgacttggctgaaaaacgtgtattccctgcgattaatatc
aaaaaatctggtacacgccgcgaagagcgtctattggacgaagacaaactgcgtaaagta
tggattttacgcaaactacttcaaccgatggatggcgtacaagctactgagttcttattg
gatcgcctaaaagaagcgaaaaccaatgatgaattcttcgagcaaatgaagcgtaaatca
caaaactaa
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