KEGG   Paenibacillus naphthalenovorans: IJ22_05000
Entry
IJ22_05000        CDS       T04167                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pnp  Paenibacillus naphthalenovorans
Pathway
pnp03030  DNA replication
pnp03410  Base excision repair
pnp03420  Nucleotide excision repair
pnp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pnp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IJ22_05000
   03410 Base excision repair
    IJ22_05000
   03420 Nucleotide excision repair
    IJ22_05000
   03440 Homologous recombination
    IJ22_05000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pnp03032]
    IJ22_05000
   03400 DNA repair and recombination proteins [BR:pnp03400]
    IJ22_05000
Enzymes [BR:pnp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     IJ22_05000
DNA replication proteins [BR:pnp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     IJ22_05000
DNA repair and recombination proteins [BR:pnp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     IJ22_05000
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IJ22_05000
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc HHH_5 HHH_2 Motilin_assoc Mt_ATP_synt
Other DBs
NCBI-ProteinID: ALS20888
UniProt: A0A0U2U3I2
LinkDB
Position
511894..514593
AA seq 899 aa
MSKLILIDGNSIAYRAFFALPLLSNSKGLHTNAVYGFTTMLLKLIEEQKPTHFLVAFDAG
KTTFRHKDYAEYKGGREKTPPELSEQFPVLKELLESFGIRQFQMDGYEADDIIGTLTRTA
DEQDGMEVLVVTGDKDMLQLASDKVKIALTRKGISEVELYDPAHIEEKYGLKPAQIIDLK
GLMGDASDNIPGIPGVGEKTALKLLHEYGSVEKVLENAAGIKGKLGEKVAAHAEDARMSK
ELATIFREVPVEIPWDDLAYGGYDGQVLGDMFRKLEFKSLLERLNLPGGGNQAASADAEA
EAKAEARIQSVQVTPDRLGELVEALPGVRALHVEVIGDNPHTGEVLGLSFYTESDSGTDP
IGYYLPFELLKQEAEEAERVRAWLADEKKSVAVYDLHRALVALFWQGLELRGVSFDVLLA
GYLLDPTESALTLHGLTARYGLTAIPADEDVFGKGAKFKLPEADVLLSLMSRKALAVMEL
ARALQAELEASGMNELFHELELPLALVLASMERKGIKVDVEELQAYGAELGKQLEKIMQS
IYDEAGMEFNINSPKQLGEILFEKLQLPVIKKTKTGYSTDAEVLEKLEPYHPLVGHILHY
RTLSKLQSTYVEGLLKEVRPDTGKVHTYYKQTIAATGRLSSQYPNLQNIPIRLEEGRKIR
KVFKPSEPGWRILTADYSQIELRVLAHISQDEKLIEAFRQNMDIHTKTAMDVFGVPEDSV
DSNMRRQAKAVNFGIVYGISDYGLSQNLNITRKDAAKFIEQYFAVFQGVRRYMDDIVKKA
REDGFVTTLLHRRRYLPEIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMVQLDKRMKE
EGVRSRLLLQVHDELVLEVPEDELEVMKKTVAEVMENAIELDVPLKVDVDDGANWYEAK
NT seq 2700 nt   +upstreamnt  +downstreamnt
ttgtccaaattgattttgatcgatggcaacagcattgcgtatcgcgcattttttgcgctg
ccgctgctcagcaattccaagggattgcatacgaatgcggtctacggctttacgacgatg
ctgttgaagctgatagaagaacaaaaaccgacgcattttctcgtggcattcgatgccggg
aaaacgacgtttcgacataaagactacgcagaatacaaaggaggaagggaaaagacgcct
cctgagctttccgaacagttccctgtgctgaaggaactgctggaatcgtttggcattcgc
caatttcaaatggacggctatgaagccgacgatatcatcggcacactgacgcgtaccgca
gacgagcaggacggtatggaagtcctggtagtgaccggggacaaagacatgctgcagctt
gcttccgacaaagtgaagatcgcgctgacgcgcaaagggatcagcgaggtggagctgtac
gatcctgcccatatcgaagaaaaatacgggctgaagcctgctcaaatcattgatcttaaa
ggtctcatgggcgatgccagcgataatattcccggcattccgggtgtgggcgagaagacg
gctctgaagctgctgcacgaatacggctcggtcgagaaggtgcttgagaacgcggcgggc
atcaaggggaagctgggcgagaaggtcgccgctcacgcggaggatgcgcggatgagcaag
gagctggcgacgattttccgcgaggttccggtggagattccttgggacgatctggcatac
ggcgggtatgacggacaagttttgggcgacatgttccgcaagctggaatttaaatcgctg
ctggagcggttgaatctgcccggcggaggaaaccaagccgcttctgcggacgctgaagcc
gaggccaaggccgaggccaggattcagtcggttcaggtgacgccggacaggctgggagag
ctggtcgaagcgctgcccggcgttcgggcgctgcatgtcgaggtcataggggataatccg
catacgggggaagtgctcggcttgtccttttataccgagtcggactccgggacggatccg
atcggctattatttgccgtttgagctccttaaacaggaggctgaagaggctgagcgtgtg
cgcgcatggctggcagacgagaaaaagtccgtcgccgtctacgatctgcaccgcgcgctg
gtggctctcttttggcaggggctggagctgcggggggtcagctttgatgtgctgcttgcc
ggttatttgctcgatccgacggaatctgcgctgactttacacggactcaccgcccggtat
ggcttgactgccatccccgccgatgaggacgttttcggcaaaggcgccaaattcaagctt
ccggaggcggatgttctgttaagcttgatgagccgtaaggcattggcggtaatggagctg
gccagggcattgcaagccgagctggaggccagcgggatgaatgagctgtttcacgagctg
gagcttcctttggcgctggtgcttgcctcgatggaacgcaaagggattaaagtggatgtg
gaggagctccaagcttacggtgccgagctgggcaaacagcttgagaagatcatgcagtcc
atttatgacgaggcggggatggagtttaacattaattctccaaaacagcttggagaaatc
ttatttgagaagcttcagctgccggtgatcaagaaaacgaaaacgggctattccaccgac
gctgaagtgctcgaaaagctcgagccttatcatccgttggtcggacatatactccattac
cggacgctgtccaagctccagtccacctatgtggagggcttgctgaaagaggtgcgtccg
gacaccgggaaagtgcacacttattataaacagacgattgcggcgacaggccgtctaagc
agtcaatatccgaatctgcaaaatattccgatccgcctggaggaagggcgtaaaatccgc
aaggtgttcaagccctcggagcccggctggcgtattctgaccgccgactattcgcagatc
gagctgcgtgtgctcgcccatatttcccaggacgagaagctgatcgaagcgttccggcag
aacatggacattcatacgaaaacagcgatggatgtattcggcgtaccggaggatagtgtc
gattcgaacatgcgccgtcaggcgaaggccgtgaacttcggcatcgtttacggcatcagc
gattacggtttgtcacaaaatttgaatatcacccgcaaggatgcggcgaagtttatcgag
caatattttgccgtcttccagggggttcgccgatatatggacgatattgtcaagaaagcc
cgcgaggatggtttcgttacgacccttcttcaccgccgccggtatttgccggaaatcaag
gcctccaatttcaatctccgttcgtttgccgagcggaccgcgatgaatacgccgatccag
ggcaccgcggcggatatcattaagctggctatggtgcagctggacaagcggatgaaagaa
gagggagtacggagcagactgctgcttcaggtgcatgacgaattggtgctcgaggtgcct
gaggatgagctggaggtcatgaaaaagacggttgccgaagtgatggaaaacgcaattgag
ctcgacgtgccgctgaaggtggatgtagatgacggggctaactggtacgaggcgaagtaa

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