Paenibacillus naphthalenovorans: IJ22_05000
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Entry
IJ22_05000 CDS
T04167
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03030
DNA replication
pnp03410
Base excision repair
pnp03420
Nucleotide excision repair
pnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IJ22_05000
03410 Base excision repair
IJ22_05000
03420 Nucleotide excision repair
IJ22_05000
03440 Homologous recombination
IJ22_05000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnp03032
]
IJ22_05000
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_05000
Enzymes [BR:
pnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IJ22_05000
DNA replication proteins [BR:
pnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IJ22_05000
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IJ22_05000
NER (nucleotide excision repair)
GGR (global genome repair) factors
IJ22_05000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
HHH_2
Motilin_assoc
Mt_ATP_synt
Motif
Other DBs
NCBI-ProteinID:
ALS20888
UniProt:
A0A0U2U3I2
LinkDB
All DBs
Position
511894..514593
Genome browser
AA seq
899 aa
AA seq
DB search
MSKLILIDGNSIAYRAFFALPLLSNSKGLHTNAVYGFTTMLLKLIEEQKPTHFLVAFDAG
KTTFRHKDYAEYKGGREKTPPELSEQFPVLKELLESFGIRQFQMDGYEADDIIGTLTRTA
DEQDGMEVLVVTGDKDMLQLASDKVKIALTRKGISEVELYDPAHIEEKYGLKPAQIIDLK
GLMGDASDNIPGIPGVGEKTALKLLHEYGSVEKVLENAAGIKGKLGEKVAAHAEDARMSK
ELATIFREVPVEIPWDDLAYGGYDGQVLGDMFRKLEFKSLLERLNLPGGGNQAASADAEA
EAKAEARIQSVQVTPDRLGELVEALPGVRALHVEVIGDNPHTGEVLGLSFYTESDSGTDP
IGYYLPFELLKQEAEEAERVRAWLADEKKSVAVYDLHRALVALFWQGLELRGVSFDVLLA
GYLLDPTESALTLHGLTARYGLTAIPADEDVFGKGAKFKLPEADVLLSLMSRKALAVMEL
ARALQAELEASGMNELFHELELPLALVLASMERKGIKVDVEELQAYGAELGKQLEKIMQS
IYDEAGMEFNINSPKQLGEILFEKLQLPVIKKTKTGYSTDAEVLEKLEPYHPLVGHILHY
RTLSKLQSTYVEGLLKEVRPDTGKVHTYYKQTIAATGRLSSQYPNLQNIPIRLEEGRKIR
KVFKPSEPGWRILTADYSQIELRVLAHISQDEKLIEAFRQNMDIHTKTAMDVFGVPEDSV
DSNMRRQAKAVNFGIVYGISDYGLSQNLNITRKDAAKFIEQYFAVFQGVRRYMDDIVKKA
REDGFVTTLLHRRRYLPEIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMVQLDKRMKE
EGVRSRLLLQVHDELVLEVPEDELEVMKKTVAEVMENAIELDVPLKVDVDDGANWYEAK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaattgattttgatcgatggcaacagcattgcgtatcgcgcattttttgcgctg
ccgctgctcagcaattccaagggattgcatacgaatgcggtctacggctttacgacgatg
ctgttgaagctgatagaagaacaaaaaccgacgcattttctcgtggcattcgatgccggg
aaaacgacgtttcgacataaagactacgcagaatacaaaggaggaagggaaaagacgcct
cctgagctttccgaacagttccctgtgctgaaggaactgctggaatcgtttggcattcgc
caatttcaaatggacggctatgaagccgacgatatcatcggcacactgacgcgtaccgca
gacgagcaggacggtatggaagtcctggtagtgaccggggacaaagacatgctgcagctt
gcttccgacaaagtgaagatcgcgctgacgcgcaaagggatcagcgaggtggagctgtac
gatcctgcccatatcgaagaaaaatacgggctgaagcctgctcaaatcattgatcttaaa
ggtctcatgggcgatgccagcgataatattcccggcattccgggtgtgggcgagaagacg
gctctgaagctgctgcacgaatacggctcggtcgagaaggtgcttgagaacgcggcgggc
atcaaggggaagctgggcgagaaggtcgccgctcacgcggaggatgcgcggatgagcaag
gagctggcgacgattttccgcgaggttccggtggagattccttgggacgatctggcatac
ggcgggtatgacggacaagttttgggcgacatgttccgcaagctggaatttaaatcgctg
ctggagcggttgaatctgcccggcggaggaaaccaagccgcttctgcggacgctgaagcc
gaggccaaggccgaggccaggattcagtcggttcaggtgacgccggacaggctgggagag
ctggtcgaagcgctgcccggcgttcgggcgctgcatgtcgaggtcataggggataatccg
catacgggggaagtgctcggcttgtccttttataccgagtcggactccgggacggatccg
atcggctattatttgccgtttgagctccttaaacaggaggctgaagaggctgagcgtgtg
cgcgcatggctggcagacgagaaaaagtccgtcgccgtctacgatctgcaccgcgcgctg
gtggctctcttttggcaggggctggagctgcggggggtcagctttgatgtgctgcttgcc
ggttatttgctcgatccgacggaatctgcgctgactttacacggactcaccgcccggtat
ggcttgactgccatccccgccgatgaggacgttttcggcaaaggcgccaaattcaagctt
ccggaggcggatgttctgttaagcttgatgagccgtaaggcattggcggtaatggagctg
gccagggcattgcaagccgagctggaggccagcgggatgaatgagctgtttcacgagctg
gagcttcctttggcgctggtgcttgcctcgatggaacgcaaagggattaaagtggatgtg
gaggagctccaagcttacggtgccgagctgggcaaacagcttgagaagatcatgcagtcc
atttatgacgaggcggggatggagtttaacattaattctccaaaacagcttggagaaatc
ttatttgagaagcttcagctgccggtgatcaagaaaacgaaaacgggctattccaccgac
gctgaagtgctcgaaaagctcgagccttatcatccgttggtcggacatatactccattac
cggacgctgtccaagctccagtccacctatgtggagggcttgctgaaagaggtgcgtccg
gacaccgggaaagtgcacacttattataaacagacgattgcggcgacaggccgtctaagc
agtcaatatccgaatctgcaaaatattccgatccgcctggaggaagggcgtaaaatccgc
aaggtgttcaagccctcggagcccggctggcgtattctgaccgccgactattcgcagatc
gagctgcgtgtgctcgcccatatttcccaggacgagaagctgatcgaagcgttccggcag
aacatggacattcatacgaaaacagcgatggatgtattcggcgtaccggaggatagtgtc
gattcgaacatgcgccgtcaggcgaaggccgtgaacttcggcatcgtttacggcatcagc
gattacggtttgtcacaaaatttgaatatcacccgcaaggatgcggcgaagtttatcgag
caatattttgccgtcttccagggggttcgccgatatatggacgatattgtcaagaaagcc
cgcgaggatggtttcgttacgacccttcttcaccgccgccggtatttgccggaaatcaag
gcctccaatttcaatctccgttcgtttgccgagcggaccgcgatgaatacgccgatccag
ggcaccgcggcggatatcattaagctggctatggtgcagctggacaagcggatgaaagaa
gagggagtacggagcagactgctgcttcaggtgcatgacgaattggtgctcgaggtgcct
gaggatgagctggaggtcatgaaaaagacggttgccgaagtgatggaaaacgcaattgag
ctcgacgtgccgctgaaggtggatgtagatgacggggctaactggtacgaggcgaagtaa
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