Paenibacillus naphthalenovorans: IJ22_06240
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Entry
IJ22_06240 CDS
T04167
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ22_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnp03019
]
IJ22_06240
03009 Ribosome biogenesis [BR:
pnp03009
]
IJ22_06240
Enzymes [BR:
pnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IJ22_06240
Messenger RNA biogenesis [BR:
pnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IJ22_06240
Ribosome biogenesis [BR:
pnp03009
]
Prokaryotic type
rRNA helicases
IJ22_06240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALS21009
UniProt:
A0A0U2UGH0
LinkDB
All DBs
Position
624261..625817
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AA seq
518 aa
AA seq
DB search
MKTFSEFGLEPKVLRAITEMGFEESTPIQEKAIPVALEGRDLIGQAQTGTGKTAAFGIPL
VNKIDVKEDRIVALIMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRALRKK
PQIIIGTPGRLLDHINRKTIKLDDVQTVILDEADEMLDMGFMDDIQSILKLVPEERNTML
FSATMPANIRRLADQFLKNPEHVSVIPKQVSAPLIDQAYIELHERQKFEALCRLLDMEAP
DLAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGVAYTFVTPREIDHLYFIEKITR
HRITRKPMPSLAEAIEGKQKLTAERVLDVLQQEEHNEYKGLAISLLEQHDSVHLLAAALK
LLTGEKKDVAIELTPEDPIRAKKRRPDVRSYGRKPAGPYGTAGGARRNDRPYDRDRNGRG
RREDGGYRDNRDYRGRSDGRDQKGYSRPSNRSNEGSLV
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttagtgaattcggcttagagccaaaggtgctgcgcgccattacggaaatg
ggctttgaggagtcgacaccgattcaagagaaagccattccggtagcgttggaaggccgc
gacctgattggccaagcccaaacgggaacaggaaaaaccgctgcattcggtattccgctc
gtaaacaaaatcgatgtaaaagaagaccgcatcgtagcgctcatcatgtgccctacacgt
gagctagcgattcaagtagcggaagaaatcgagaagctgggacgcttcaaagggattcgc
tctcttcctatttacggcggtcaggatatcgtaaagcaaattcgcgcactgcgcaaaaag
ccgcaaattatcatcggtacgccaggacggctgcttgatcatattaaccgcaagacgatt
aagcttgatgatgtgcagaccgttattctggacgaagcggacgaaatgctcgacatgggc
ttcatggatgatatccaatcgattctcaaattggttcccgaagagcgcaacacgatgctg
ttctccgccacgatgccggccaatattcgcaggctggccgatcagttcctaaagaaccct
gaacacgtatccgtcattccaaagcaagtcagtgctccgctgatcgatcaagcatatatc
gagctgcatgagcgtcagaaattcgaagcgctttgccgcttgctggatatggaagctccg
gatcttgcgatcattttcggccggaccaagcgtcgtgtcgacgagctctccgaagcgctg
cagaagcgcggctatacggcagaaggacttcatggcgacttgtcccagaaccagcgcgat
aatgtgatgcgcaagttccgggacggcagtatcgacgttctcgtagcaacggatgtagcc
gctcgcggcttggacgtatccggtgtaacgcatgtcatcaacttcgacctgccccaggat
ccggaaagctatgtacaccgtatcggccgtaccggtcgcgcgggcaaagaaggcgttgcc
tacacgttcgttacaccgcgtgagatcgaccacttgtacttcatcgagaaaattacgcgt
caccgcataacccgcaagccgatgccgagcttggctgaagccattgaaggcaagcaaaaa
ttgacggctgagcgcgtgctcgatgtgctgcagcaagaagagcataacgaatacaagggc
cttgcgatttctcttctggagcagcatgactccgtacatttgcttgcggccgcgctgaag
ctgttgaccggagagaagaaggatgtagccattgagcttactccggaggatccgattcgc
gccaaaaagagaagaccggatgttcgcagctacggccgcaaaccggcaggtccttacgga
acggccggcggtgcccgcaggaacgacaggccttacgatcgtgaccggaatggacgcgga
cgccgtgaggatggcggataccgcgataaccgcgattatcgcggacgttcggacggccgt
gatcaaaaaggctattcccgtccttccaaccgttcgaatgagggaagtttggtataa
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