Paenibacillus naphthalenovorans: IJ22_09180
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Entry
IJ22_09180 CDS
T04167
Name
(GenBank) subunit C of exonuclease SbcCD
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pnp
Paenibacillus naphthalenovorans
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_09180
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IJ22_09180
Archaeal homologous recombinant proteins
IJ22_09180
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
MMR_HSR1
ABC_tran
DUF1786
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALS21300
UniProt:
A0A0U2VYD3
LinkDB
All DBs
Position
933809..937264
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AA seq
1151 aa
AA seq
DB search
MRPIHLQIAGLQSYREAQEIDFAALTGAGVFGIFGPTGSGKSTLLDAITLALFGKVERAP
GGTQAIMNQAEQTLSVSFTFELGSGSGAKRYRVDRQFKRSGEQSILGSLCRLIHYRDGES
VVLADKAGEVNQHIQDILGLSMADFTRAVVLPQGKFAEFLTLAGKDRRAMLQRLFHLEPY
GDKLSAKTSARYKETDAALKELQAEQQGLGDASEAALAQAEARLAEAREAARVLRERLIA
CERRATELRAVRELQRERAAVAARRAALAAQAPHVAALAGRLARGAQAERLRPLVRRLAA
AEAQLAQQRAAAAAAAEALAAAQGALAQAQAAQAAARDALAAQEAPLAARLEQLRQAAAL
AAELAQSRERLAVLAAEAERSRAQLAGLHAEQAREAELREKALQRQAQLKDELKLAEVPR
AYRDRLQEALQEKRELDRLGKQYGEQQAELARRQAELERLKQSLAALELTEKEWESRGAV
WLERLASLHTACFQTEQRLSALLGQIPDEISRLKSMQKQAERTAMANALAAHLHDGEACP
VCGSSVHPKPAVERGELTAVQSGEDMHHTAVAQLERLQDDVRRRQLDLRQLLHALQAMEQ
QWNQAVDEEVRQPLSEKLSAHHEAAASLSAEFAGGTGVFADELQLLLDTSANELELARRE
AQQLQHALQTLLQEKRQLVKQRHDLDAREQTARGVYEAEAQKAAETRDLLQTLSSGWTNR
FPDYRPEDVAALAERLKQQEQLADELKSRLDKSVEFLSAKQTRMEQLLQEVGEAEKQAVR
ITAEQQALQQHVDAQAERLYAWVGDEDAGGLASEAQTRLNELRTEAQRTAKLLEEMQSGY
QESAKTESAVRQAAESARLALEEAEREWAQQSEAEGFSTVQEVSDALISPEQQQQWSAEV
EAHGKLEHQLSARLAELDHELAGREVTDDMWEAMERELGECKAQDEAALQTMAKAERDWE
DLQAKHRRWRELESKQTACRSELERLGKLQSVLRGNAFVEFLAEEQLMHVSRAASERLGQ
LTRQRYAIEVDSGGGFVMRDDANGGVRRPVTTLSGGETFLTSLSLALALSMQIQLKGEHP
LEFFFLDEGFGTLDQELLDTVITALEKLHTDKLTVGVISHVPELRARLPRRLVVHPAEPG
GQGSRISMEIM
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcggccgattcatttgcaaatcgccggacttcagagctatcgggaagcgcaggagatc
gattttgccgcgctgacgggcgccggcgtgttcggtattttcggcccgacgggcagcggc
aaatccaccctgctcgatgcgattacgctggcgctgttcggcaaggtggagcgcgcgccc
ggcggcacgcaggcgatcatgaatcaggcggagcagacgctgtccgtctcatttaccttc
gagctgggttctggttccggggccaagcggtaccgggtggaccgccagtttaagcgcagc
ggagagcagtctatcctgggcagcctgtgccggctgatccattaccgcgacggcgaatcc
gtcgtattggccgacaaagcgggggaagtcaaccagcacattcaagacattttagggtta
tcgatggctgattttacccgtgccgtcgtgctgccgcaggggaagtttgcggaatttctg
acacttgccggcaaggaccggcgggcgatgctgcagcgattgtttcatctggagccttac
ggcgacaagcttagcgccaagacctccgcgcgctataaggagacggatgccgcgctcaag
gagcttcaggcggagcagcagggcctgggcgacgcttcagaggcggcgctggcgcaagcg
gaggctcggctggccgaggcgcgcgaagcggcccgcgtgctgcgcgagcggctgatcgcc
tgcgagcgacgcgcgaccgagctgcgcgccgtccgcgagctgcagcgcgaacgcgcggcg
gtggctgcgcgtcgggccgcgctagcggcgcaggcgccgcacgtggcggccctcgccggg
cgcctcgcgcggggcgcgcaggccgagcggctgcgcccgctcgtgcgtcggctcgccgcc
gccgaggcgcagctcgcgcagcagcgtgcagccgccgccgcggccgccgaggcgctcgcc
gccgcacagggcgcgctggcgcaggcgcaggcggcgcaggccgcggcgcgcgacgcgctg
gctgcgcaggaggcgccgctggccgcgcgcctcgagcagctgcgccaggcggcggcgctc
gcggccgagctcgcgcaaagccgcgagcggctcgccgtgctggccgccgaggccgagcgc
agcagggcgcagctcgcggggttgcatgcggagcaggcgcgcgaggccgagctgcgcgag
aaggcgctgcagcggcaggcgcagctcaaggacgagctgaagcttgccgaggtgcccagg
gcgtatcgggatcggctccaggaggcgctgcaggaaaagcgcgagctcgatcggctcggg
aagcagtacggtgagcagcaggcggagctggcccggcggcaggccgagctggaacggctg
aagcaatcgctggcggcgctggagcttacggagaaagaatgggagagtcggggagcagtc
tggttggaacggttagcttcgttacatacggcatgttttcaaaccgaacaaaggctatcg
gcgcttctgggccaaatccccgacgaaatctccaggctcaagagcatgcaaaagcaggcc
gaacgaacggccatggccaatgcgctggcggcacatttgcatgacggcgaggcttgtccg
gtttgcggctcgtcggttcatccgaagccggctgtggagcgcggggagctgacagccgta
cagagcggggaagacatgcatcacacggccgtggcacagctggagcggctgcaggacgat
gtccggagaaggcagcttgatctgcgccagctgctgcatgctctgcaggcgatggagcag
cagtggaatcaggccgtcgatgaagaagtacggcagcccctgtcggaaaagctgtccgcg
catcatgaggcggctgcgtcgctttctgctgaattcgcaggagggacgggcgtttttgcc
gatgagcttcaacttttgctggatacgtctgcgaatgaacttgagcttgcccgccgggaa
gcgcagcagcttcagcatgcgctccaaacgctgctgcaggagaagcggcagctggtcaag
cagcgccatgatctggacgccagagaacaaacggcacgcggcgtctatgaagcggaagcc
caaaaagcggcggaaacgcgcgatttgcttcaaacgctcagctccggctggacaaacagg
tttccggactacaggccggaggacgttgcggcattggcagagcgcttgaagcagcaggag
cagttggcggatgagctcaaaagccggttggacaaaagcgtggaatttttgtcggccaag
caaacgcgcatggagcagctgctgcaggaagtgggtgaagccgagaagcaagcggtccgg
ataactgcggaacagcaagcgctgcagcagcacgttgacgcgcaggccgaacggctctat
gcctgggtcggcgatgaggatgccggcggtctggcctccgaggcgcagaccaggctgaat
gagctgcgaacggaagcgcaaaggacagcgaagctgctggaagaaatgcagtccgggtat
caagaatcggccaagacggaatccgccgttcgtcaggcggcggaatcggcgcggctggct
ttggaagaagcggaaagggaatgggcccagcagtcggaagcggaaggtttctctacggtt
caggaagtgtcggatgcgttgatctcgcctgaacagcagcagcagtggagtgccgaagtc
gaagctcacggcaagctggagcatcagctgtcagcccgcttggctgagctcgatcatgag
ctggcgggccgtgaggtcacggatgacatgtgggaagcgatggagcgggagcttggcgaa
tgcaaggctcaggatgaagcggctctgcaaacgatggccaaggcggagagggattgggag
gatctgcaggccaaacaccggcgctggcgcgaactggagtcgaagcagacagcctgccgc
agcgagctggaacggcttggcaagctacagagcgtgcttcggggcaacgcgttcgttgaa
tttctggcggaggagcagctgatgcatgtcagccgtgcggcttccgagcgattaggacag
ctaacccggcaaaggtacgcgattgaggtggactccggcggaggcttcgtcatgcgggac
gatgcgaatggaggggtgcgcagaccggtgactacgctctcgggcggcgagacgttcttg
acctcgttatcgcttgcgctggctctttccatgcaaattcagctcaaaggcgagcatccg
cttgagtttttcttccttgacgaaggtttcggtacgctggatcaggagctgttggatacg
gtcattacggctctcgaaaaactgcatacggacaagctgacggtaggcgtcatcagccac
gtgcctgagctgcgggcccggcttcccagacggcttgtggtgcatcccgcggagcccggc
ggccaaggcagccggatctcgatggagatcatgtaa
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