Paenibacillus naphthalenovorans: IJ22_12470
Help
Entry
IJ22_12470 CDS
T04167
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pnp
Paenibacillus naphthalenovorans
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnp03032
]
IJ22_12470
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_12470
Enzymes [BR:
pnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IJ22_12470
DNA replication proteins [BR:
pnp03032
]
Prokaryotic type
DNA Topoisomerases
IJ22_12470
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IJ22_12470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
DUF7340
Lar_restr_allev
Auto_anti-p27
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ALS21623
UniProt:
A0A0U2VQ26
LinkDB
All DBs
Position
1257466..1259565
Genome browser
AA seq
699 aa
AA seq
DB search
MADSLVIVESPAKAKTISKYLGSKYIVKASMGHIRDLPKSQIGVEVKKNFEPKYITIRGK
GSVLKELKDARKKVKKVYLAADPDREGEAIAWHLAHYLELSDQEDCRVVFNEITKQAVKD
AFKTPRKINKDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIYDREN
EIKAFVPEEYWSITAKLAAGKAEFEAKFFSSGEKKELKTEAEVNEILAALNKSEFVVSEV
REKERQRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLGSEGTVGLITYMRT
DSTRISPVAQEEAREYILQKYGEAYYPETPRSYLKKNANAQDAHEAIRPSSVLREPDQIK
EYLSRDQLRLYKLIWERFVASQMASAVMDTMTVDLTAGPVVFRAVGSKIKFPGFMKVYVE
GSDDAAADSGDEEKLLPPLKQGDHVIKKQIDPKQHFTQPPPRYTEARLVKALEEMGIGRP
STYAPTLETIQKRGYVAIEDKKFVPTELGELVIQQMIEFFPEILDVEFTAQMEEDLDHIE
EGKEDWVQVLSEFYESFEKRLEVAEEEMEKVEIQDEVSDDICEKCGNHFVYKMGRFGKFL
ACSGFPDCRNTKPIVKNTGVTCPGCHKGQIIERRSKKGRIFYGCDRYPDCEFVSWDKPVD
RPCPKCGSMLVEKRNKSGTFIQCVACDYREEAKEEQDRD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggccgattcgttagtcattgtggagtcacccgcaaaagccaaaacgatcagcaaatat
ttaggaagtaaatatattgttaaggcctccatgggtcatattcgcgatctgcctaaaagt
cagatcggggttgaagtcaaaaaaaactttgagccgaagtatattacgatccggggcaag
ggatctgttctcaaagagttgaaggatgccagaaaaaaagtcaaaaaagtatatctggca
gcggaccctgaccgtgaaggggaagccatcgcctggcatttggcgcattatttggaactg
tccgaccaggaggattgccgtgtcgtttttaacgagatcacgaaacaagcggtaaaggat
gctttcaagacgccgcgcaaaatcaataaggatttggttaacgcccagcaggcgcggcgc
attctggaccggcttgtcggctacaaaatcagtccgctcttatggaaaaaggtaaagaaa
ggactgtccgccggtcgggtacagtcggttgccgtgaagctgatctacgaccgtgaaaat
gagattaaagcgttcgttccggaggaatattggtcgataaccgccaagctcgctgccgga
aaagcggagtttgaggcgaaatttttcagcagcggcgagaaaaaggaattgaagaccgag
gccgaagtcaacgaaatcctcgccgcattaaacaaatccgagtttgttgtaagcgaggtc
agggagaaggagcgccagcgcaatccttcccctccgttcattaccagttcgctacagcag
gaagccgcccggaaattgaacttccgcgccgcgaagacgatgtccgtagctcagcaatta
tatgaaggaatcgatttgggcagcgaaggaacggtcggtttgatcacctatatgcgtacg
gattctacccggatttcaccagtggcgcaggaagaagccagggaatacatcctgcaaaaa
tatggggaagcctactatcctgaaacgccgcgcagttacttgaaaaagaatgccaacgcg
caggatgcccatgaagcgatccgaccaagctccgtcctgcgtgaaccggatcagattaag
gagtatctaagccgtgatcaactccggctgtataagctgatatgggaacggtttgtggcg
agccaaatggcttccgccgtgatggacacgatgacggtcgatctgactgcaggtccggtc
gtattccgcgccgttggctctaaaatcaaatttccaggctttatgaaggtatatgtcgag
ggaagtgacgatgccgcagcggatagcggggacgaagaaaaattgctgccgccgcttaaa
caaggagatcatgtgattaaaaagcagatcgacccgaagcagcattttacacagcctcct
ccccgttataccgaggcgcgtttggtcaaggcactggaggaaatgggcatcggcagaccc
agtacgtatgcgccgacactggagacgattcaaaagcgcggctacgttgccatcgaggac
aaaaaattcgtgcctacggagctcggtgagctcgtgattcagcaaatgattgaatttttc
cctgaaattttggacgtggaatttacggctcaaatggaggaggatctcgatcatatcgag
gaaggcaaggaagattgggttcaggtgctcagcgaattttacgagtcgtttgagaagcgg
ttggaagtagcggaggaagagatggagaaggtggaaatccaggacgaggtttctgatgat
atttgcgagaaatgcggtaatcattttgtttacaaaatgggacgctttggcaaatttctg
gcttgctccggttttcctgattgccgcaacaccaagccgatcgttaaaaataccggcgtg
acttgtcccggttgtcataaaggtcagattattgaacgcaggagcaaaaaaggccggata
ttttatggctgcgaccgttatcccgattgtgaatttgtttcctgggataagccggtggac
cgcccttgtccaaagtgcggaagcatgctggtggagaagcgtaacaaatcaggcaccttt
attcaatgcgtcgcctgtgactatagagaagaagcgaaggaagagcaggatcgcgattaa
DBGET
integrated database retrieval system
