Paenibacillus naphthalenovorans: IJ22_19120
Help
Entry
IJ22_19120 CDS
T04167
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IJ22_19120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_19120
Enzymes [BR:
pnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IJ22_19120
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IJ22_19120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
UvrD_C_2
SH3_13
Viral_helicase1
OB_YrrC
RNA_helicase
PIF1
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
ALS22286
UniProt:
A0A0U2W769
LinkDB
All DBs
Position
complement(1845492..1847837)
Genome browser
AA seq
781 aa
AA seq
DB search
MENIKLDVTPIKCLYPKTFNPTNDFYIYSCKTDSEEVELNRYGTITIKGKMQRLDLDVTY
KAEIAFGENHPTYGVSYNVISVYQELPKTTEAQKDYLRALITENQIYEIYKIYGDQDIIK
LFKEDKIDYKKIKGFGEVTYKRVRQKIVENLDYQELLSNLGKYGITYDTIVKLMKEFGSA
QIAIQKVKNNPYTLTRIHGIGFKKADAIARNMAKEEIELLLEAGKINKKEAEQMFVEKVF
ESPFRIQSGIRHVIEQEQGKGNTYIEEDELLKQSVELLQVEDMLIQQQIKNTEGLHLEGT
MIALENTYKTEEFISSWIKEKLKNPNELNFNVEEFIERMEEKHQIKLSHQQKSFFYNVKN
HSVHLLVGYAGCGKSKLQSLLRDLLKELGLTAKWLAPTGNAAKILSGYIGEKASTAHKAI
GYGQNKEEKDLIEIIEDYIIIDETSMLDVFINASILKKIKNPEARILFIGDAFQIPSVQC
GNLLHDMLESGVIPTTKLDIVFRQSEGGILDIATKIRLGEKFIDNDFNGRAVYGKNMVIH
CTEQEWMSDGYKYYYNRFLDNHKPEEIMVLSPTKKGKLGTITINKEIQQIVNPSSPLKKE
IEFGEDGVLRIGDYVINIKNTYDIMNVSKEVTEIVNGDKGIVYDLITDWNPKRDRYNGNK
SNYELEEDEFGDEEEVNENGVYVKFDSDEIKISLQDKFQLLHAWCLTMHKSQGGNAKAVL
IICDKSHKFQMSANLLYTAVTRATDYVVIVCQADVINHAMRKVENLRRNTRLEELLRREV
V
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattaaattagatgtaacgccgataaaatgtttgtatcctaaaacttttaac
ccaacaaatgatttttatatttattcttgtaaaacagacagtgaagaagtagagttaaat
agatatggaactattactataaaaggaaagatgcaaagacttgatctagatgttacatat
aaagctgaaatagcatttggtgaaaatcatcctacatatggagttagttataatgttatc
tctgtttatcaggaattaccgaaaacaaccgaagcgcaaaaagattatcttagagcactt
ataactgaaaatcaaatttatgaaatttacaaaatttatggagatcaggacattattaaa
ctctttaaagaagataaaattgattacaaaaaaattaaaggttttggggaagttacgtat
aaaagagtcagacagaaaattgttgagaatttagattatcaagaactgttgagtaattta
ggtaaatatggtatcacctatgacacaattgttaaattaatgaaagaattcggtagtgct
caaattgccattcaaaaagtaaagaataatccatatacattgactagaattcatggaatt
ggatttaaaaaagcagacgcaattgctagaaatatggctaaagaagaaattgaattattg
cttgaggcaggaaaaataaataaaaaagaagcagaacaaatgtttgttgaaaaagtgttt
gaaagtccatttcgaatccagagtggaatacgacatgttatagaacaagaacaaggaaaa
ggaaatacatacatagaagaagatgaactattaaaacaaagtgttgaattattacaggtt
gaagatatgttgattcaacaacagataaaaaacacagaaggattacatttggaaggaact
atgattgctttagaaaatacatataagacagaagaatttattagtagctggattaaagaa
aaacttaagaacccaaatgaattaaattttaatgtagaagaatttattgagcgaatggaa
gagaagcatcagattaagttatcacaccaacagaaatcttttttctataatgttaagaat
cattctgtgcatttacttgttggttacgcaggctgtggaaaatcaaaattacaatcattg
ttacgtgatttattaaaagaactaggacttacagcaaaatggcttgctccgactggaaat
gcagccaagatcctgtcagggtatattggagaaaaagcatctactgcacacaaagcaata
ggctatggacaaaataaagaagaaaaagatttaatagagattattgaagactatattatc
attgacgaaacaagtatgctcgatgtatttattaatgcttcaattttgaaaaaaattaaa
aatcctgaagcaagaatcttgtttattggggatgcattccaaataccaagcgtccagtgt
ggcaatctccttcatgatatgcttgagagtggagttattcccacaactaaactcgatatt
gtctttagacaaagcgaaggtggaatattggatattgccactaaaattagactaggagaa
aaatttattgataatgatttcaatggtagagctgtatatggaaaaaacatggtgattcat
tgtacagagcaagagtggatgagtgatgggtataagtattactataatagatttttagac
aatcacaaaccagaagaaattatggtgctcagtccaactaaaaaaggaaagcttggaaca
ataactattaataaagaaatacaacaaattgtaaatccgtccagtcctttaaaaaaagag
attgagtttggggaagatggggtattacgtattggagactatgtaataaacataaaaaat
acatatgatatcatgaacgttagtaaagaagttactgagattgtaaatggagacaaggga
atcgtttatgatcttattacggactggaatcctaaacgtgatagatacaatggaaacaaa
agtaactatgaactagaagaagacgaatttggagatgaagaagaagttaatgaaaatgga
gtgtatgtaaaatttgattcagacgaaatcaaaatctcactacaagataagtttcaactt
ttacatgcttggtgtttgactatgcataagagtcagggtggaaatgctaaagcggtatta
attatttgtgataagtctcataaatttcagatgagtgcaaacttgttgtatacggcagta
acaagagcaacagattatgttgtaattgtttgtcaagcagatgtaattaatcatgctatg
agaaaagttgaaaatttgagaagaaatacgaggttagaagaattactaagaagagaagtc
gtgtaa
DBGET
integrated database retrieval system
