Paenibacillus naphthalenovorans: IJ22_41470
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Entry
IJ22_41470 CDS
T04167
Name
(GenBank) subunit B of excinuclease ABC
KO
K03702
excinuclease ABC subunit B
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IJ22_41470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_41470
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IJ22_41470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IJ22_41470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
UvrD-helicase
AAA_30
AAA_22
AAA_16
AAA_5
AAA_7
AAA
HEM4
AAA_25
DUF87
Phage_Mu_Gp48
UB2H
nSTAND3
DUF3071
Motif
Other DBs
NCBI-ProteinID:
ALS24443
UniProt:
A0A0U2INE1
LinkDB
All DBs
Position
complement(4131557..4133554)
Genome browser
AA seq
665 aa
AA seq
DB search
MNEVVVSDKKFQLVSEFEPQGDQPEAIRRLVESIRSGQKHQTLLGATGTGKTFTAAHVIA
QLNRPTLLIAHNKTLAAQLCSELQEFFPNNAVSYFVSYYDYYQPEAYIPSTDTYIEKDSS
INEEIDKLRHSATSSLFERRDVIIVASVSCIFGLGSPMEYRNLVLSLRVGMERSRNEILH
RLIDIQYQRNDFNFVRGTFRVRGDVIEIFPASRGEQAVRIELFGDEIERITEIDVLTGEI
IGQRDHIAIFPASHFVTHEDNMKRALVNIERELEERLAELRGQGKLLEAQRLEQRTRYDI
EMMQEMGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLIIVDESHVTLPQIRGMYNGD
RARKEVLVEHGFRLPSALDNRPLRFEEFEQKINQILYISATPGPYEIEHCPEMVEQIIRP
TGLVDPEIDVRPTKGQIDDLVGEIQDRIKKDERVLVTTLTKKMAEDLTDYLKEIGIKVRY
LHSDIKTLERMQILRELRLGVFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSL
IQTIGRAARNANGRVIMYGDKITDSMAKAIQETERRRRIQMAYNEKHGITPQTIQKKVRD
VIEATKVAEQKTEYLADIKQTKMSKKDRMSLIERLEKEMKEAAKNLQFERAAELRDAVLE
LKAEL
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaggtagtggtaagcgataagaagtttcagctggtatcggaattcgagcctcag
ggagaccagccggaagcgatcaggcgtctggtggaaagcattcgttcgggacagaaacac
caaacactgctaggagcgacgggcacaggcaaaacgtttacggcggctcatgtcattgcc
cagttgaaccggcctacgctgctgattgctcacaataagacgctcgctgcgcagttatgc
agcgagctgcaggagtttttcccgaataatgcagtatcgtattttgtaagctactatgac
tattatcagcccgaggcgtatatcccgtcgacagacacttacatcgagaaggattccagc
atcaacgaagaaattgataagctgaggcactccgctacgagttccttgtttgaacgcaga
gatgtgatcatcgtggccagcgtgtcctgtattttcggtctcggttcgccaatggagtat
cgcaatttggttttgtcgctgcgggtggggatggaacgctcccgcaatgaaattttgcat
cggttgatcgatattcaatatcagagaaatgattttaactttgtccgcggcacattccgt
gtccgcggtgatgtcattgaaatattcccggcttcacggggggaacaggcggttcgcatc
gagttattcggagacgagatcgaacggattacggagatcgacgtgctaacgggagaaatt
atcggccaacgggatcacatcgccatttttccggcatcgcacttcgtaacccacgaggat
aatatgaagcgggcgctcgtcaatattgaacgggagctggaggaacggctggccgagctg
agaggacagggtaagctgctggaagcccagcggctggagcagcgtacacgctatgacatt
gagatgatgcaggaaatgggcttttgctcgggcattgagaactattccggtccgctgaca
ttccgcgaacgcggagccacaccatacacgctgctggattattttccggacgatatgctg
atcatcgttgatgaatcccatgtcacgcttccgcagattcggggcatgtacaacggcgac
cgggcgcgcaaggaagtattggtggagcacggcttccggcttccgtcggcgctggataac
cggcctctccgattcgaagaattcgaacaaaagatcaatcagatcttatatatatcggct
acgccgggaccgtatgaaatcgagcactgtccagaaatggtcgagcaaatcatccggccc
accggactggtggatccggagatcgacgtcagacccacgaagggccaaatcgacgatctg
gtcggggaaattcaggaccgcatcaagaaggatgaacgcgtgctggtgacgacgctgact
aagaaaatggcggaagatttaaccgattatctcaaagaaatcggcatcaaggtgcgctac
ctgcattcggatatcaagacgctggagcgcatgcaaattttacgggaactgcggcttggc
gtattccacgtgctggtagggatcaacctattacgggaaggacttgaccttccggaggtg
tcgctggtggccatactcgatgcggataaggaaggctttcttcgcgccgaacgatcgctt
attcagacgattggccgcgctgcacggaacgcgaacggtcgtgtcatcatgtacggcgat
aagatcacagactccatggccaaagcgattcaagaaaccgaacgccgccgccgcattcag
atggcatataacgaaaagcacggcataacgccgcaaacgatacaaaagaaagtgcgcgat
gtgattgaagcgacgaaagtcgccgagcagaagacggaatatttggcggatatcaagcag
accaagatgtccaagaaggaccggatgtcgttgatcgaacggttggagaaggaaatgaag
gaagcagccaaaaacctgcagttcgaacgcgcggcagagctgcgcgatgctgtgcttgag
ctgaaggcggagctgtaa
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