Paenibacillus naphthalenovorans: IJ22_45770
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Entry
IJ22_45770 CDS
T04167
Name
(GenBank) subunit beta' of DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IJ22_45770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnp03021
]
IJ22_45770
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_45770
Enzymes [BR:
pnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IJ22_45770
Transcription machinery [BR:
pnp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IJ22_45770
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IJ22_45770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ALS24854
UniProt:
A0A0U2VVW6
LinkDB
All DBs
Position
4568576..4572196
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAVKKLLQ
DIDIEKEVDMLKEELKTAQGQRRNRAIKRLEVMEAFRNSKNMPEWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMLAAGNIL
NPKDGKPVVTPSQDMVLGSFYLTTENKEAKGSGTIIRSIEEAVSLYHRGDAALHARVAIP
AKALKKTSFTPEQEKAMLITTIGKIIFNEIYPPDFPYINEATKANLLNGPSNDYFVFEKG
VDLRKKMAELPETKAVGKDYLGTIIAECFRRYHTTQTSITLDNIKQLGFTYSTRAGITIA
VADVTVPKEKDEILRESDEKVRVVTNQYRRGLITDDERYDRVIAIWSKAKDEITDILMKS
LDKYNSINMMVESKARGNKSQITQLGGMRGLMANPSGKIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFLVSRIQDGKEVIEDL
YDRIEGRYSFETIRHPQTGEIIINRNELIEAHIADQIIAAGIEKVQIRSVLSCRSRHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISEIDGVIKEIREAKDRREIEVQGEAESKVYSVPYGSRIRVTVNQTVEA
GDELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGNTTLLPGSFVDIHEYEEANKVALFANEEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMARYRNIRITDPNAEPRDEELTEA
EAVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtcaacaattttgaattcatgaaaatcggattggcttcccccgacaaaatc
cgttcatggtccagaggcgaagtgaaaaagccggagacgatcaactacaggacgctgaaa
cctgaaaaagaaggcttgttctgtgagaaaatatttggtccgaccaaggattgggaatgt
cattgcggtaaatataaacgggttcgttacaaaggcgttgtctgtgaccgctgcggcgta
gaagttacgcgtcaaaaagtgcgccgcgagcgcatgggtcacatcgagcttgcagcaccg
gtttcacatatctggtatttcaaaggaattccaagccgtatggggcttgcgctcgacatg
tctccgcggtctctggaagagatcatctactttgcttcctatgtcgtaactgatcctgga
gatacgccgctggagaaaaaacagctgctctccgagaaggaataccgcagctatcgggaa
aaatacggctatgcattccaagccggtatgggcgcggaagcggtgaagaagctgcttcaa
gacatcgacatcgagaaagaagtcgatatgctgaaggaagagctgaaaaccgctcaaggt
caacgccgtaaccgtgccattaaacgtcttgaggttatggaagcattccgtaactccaaa
aatatgccggagtggatggtgctcgacgtactgccggttatccctccggagcttcgtccg
atggttcagcttgacggggggcgctttgcgacctctgacttgaacgatttataccgccgt
gtcatcaaccggaacaaccgtctgaaacgtctgcttgatctgggcgctcctgatattatc
gtgcagaacgaaaagcggatgcttcaggaagcggttgacgcgcttattgataacggccgc
cgcggccgtcccgtaacgggaccgggtaatcgtccgctcaaatccctcagccacatgctg
aagggtaaacaggggcgtttccgtcaaaacctgctgggtaagcgggttgactactccggc
cgttccgttatcgtggtgggaccgagtctcaaaatgtatcagtgcggacttccaaaggaa
atggcattggaattgtttaagcctttcgtcatgaaagagcttgtgaataaaggtcttgcg
cataacattaagagcgcaaaacgcaaagtggaacgcgttagtcctgaagtatgggatgtt
cttgaggaagtcatcaaggaacacccggttctgctgaaccgtgctcccacgcttcaccgt
ttgggcattcaggcgttcgagccgattctggttgaaggccgggcgatcaagctgcatccg
cttgtttgtacggcatataacgccgactttgacggagaccagatggccgttcacgttccg
ttgtctgcagaagcccaggcggaagcccgcgtgctgatgctcgcagcaggcaatattctc
aacccaaaagacggcaaaccggttgttacgccgtcgcaggacatggttttgggaagcttc
tacttaacgacggaaaacaaggaagccaaaggctccggtacgattattcgttcgattgaa
gaagccgtgtcgctctaccaccgcggagatgcggctctgcatgcgcgcgtggcgattccg
gccaaggctttgaaaaaaaccagctttacgccggaacaagaaaaggccatgctgatcaca
acgatcggtaaaattatcttcaatgagatttatccgccggacttcccatacattaatgaa
gcgacgaaagcgaatttgctgaacggaccttcaaacgattatttcgtgttcgagaaaggc
gtggatcttcgcaagaaaatggcggagctgcctgaaacgaaagcggtcggaaaagattac
cttggcacgatcattgcagaatgcttccgccgttaccatacgacacaaacgtcgatcacg
ctggataatatcaagcagcttggatttacttactctacgcgtgccggtatcaccattgcc
gtagcggatgtgacggttccgaaggagaaagatgaaatccttagagaatccgacgaaaaa
gttcgtgtggttacgaatcaatatcgccgcggtttaattacagacgatgaacgctacgac
cgcgttatcgcgatctggagcaaggccaaggatgaaattaccgatattttgatgaagtcg
cttgataaatataattccatcaatatgatggtggaatccaaagcacggggtaacaaatcg
caaattacccagcttggcggaatgcgcggtctgatggctaacccgtccggtaaaatcatc
gagcttccgatcaagtccaatttccgcgaagggttgaccgtattggagtactttatctcc
actcacggtgcacggaaaggtttggccgataccgcacttcgtacggcggactcgggttac
ttgacccgccgtctggtagacgtggctcaagacgtaattgttcgtgaagaagattgcggt
acggataaagggttcctcgtcagcagaatccaggatggtaaagaagtcatcgaagatctg
tatgaccgaatcgaaggacggtactcctttgaaacgattcgtcatccgcaaacaggtgag
attattattaaccgtaacgagctgattgaagcacatattgccgaccaaattatagcagcc
ggtattgagaaggtacaaatccgttccgtactcagctgccgttccagacatggcgtctgc
aaaaagtgctacggccgtaatctggcgaccggcaaacatgtagaaatcggcgaagcggta
ggtattatcgcggcgcaatccatcggtgaaccaggaacgcagcttaccatgcgtacgttc
cataccgggggcgttgcgggcgacgacatcacgcaaggtttgccgcggattcaggagctc
ttcgaagctcgtaatccaaaagggcaagcgataatttctgaaattgacggtgtgattaaa
gaaatccgtgaagcgaaggatcgtcgtgagattgaggttcaaggcgaagctgaatcgaaa
gtatattccgtaccttacggctcccggattcgcgtcacagtgaaccagaccgtagaggcc
ggagatgagctgacggaaggctcgatcgatccgaaggaaatgctgcgcattaaagggatc
cgcggcgtgcagaactacattttacaggaagttcagcgcgtataccggaaccaaggggtg
gaaatcaacgacaagcacgtcgaagtgatgatccgccaaatgctgcgtaaaattcgcatc
gtcgatgccggaaatacgactctgcttccgggatcctttgtggacattcatgagtacgaa
gaagcgaacaaagtggcgcttttcgccaatgaggaacctgctgttgccaaaccggtgctt
ctgggtattaccaaagcatcgctcgaaacagattccttcctctctgcggcatcgttccag
gaaacgactcgtgtcctgacggatgcggcgattaaaggaaaagtcgaccagctgctcggt
ttgaaggagaatgtgatcatcggtaaactgataccggcaggtacggggatggcaagatac
cgtaacatccgcattacagatccgaacgcagagccaagggatgaagagttgactgaagca
gaagcggtaaccgtagagtaa
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