Pandoraea norimbergensis: AT302_03750
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Entry
AT302_03750 CDS
T04226
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pnr
Pandoraea norimbergensis
Pathway
pnr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT302_03750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnr03019
]
AT302_03750
03009 Ribosome biogenesis [BR:
pnr03009
]
AT302_03750
Enzymes [BR:
pnr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AT302_03750
Messenger RNA biogenesis [BR:
pnr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AT302_03750
Ribosome biogenesis [BR:
pnr03009
]
Prokaryotic type
rRNA processing factors
AT302_03750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALS59016
UniProt:
A0ABN4JF64
LinkDB
All DBs
Position
5198461..5201862
Genome browser
AA seq
1133 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFRDGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAVEGAANNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVAAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDTPKASYALAEEAARASEDDPAGYSKKKEDVRPRQEAAVKGITP
EQPAPAAQPRPEPVAATPAPAAPVRSGGFIGFVKRLLGLEPAAPAPVKDEAPAKPAARPP
RERHDRPHQQNRNRRGNARDENKTGKDNAGQPAREGRAARPERAERTDRNEQRADRNERN
ERGDRTERNERTERNDRNERGDRNERNERQEGRDKRERDDAQRQPAQEVRAEDGREPREG
RERGNRRDRNRRQTEGAEGQQAAAPQRAAQVAAPLSAGEDAEYDQHDRLAAQGAQAEGAQ
GVAGDESEQANEERRRSRRRGRRGGRREREAGEQQLHADGEQGEGAENAGNAGNADHAGS
AASEYAAAPALTEERAEHVAPQAVAPAVVAAAATAATVAAAQVHTEPAQAPAQTFQPVET
KPAVATPTLEQVQTQAAPVAPAAPVVAVATVSEAAPVATPEVPVQVVTEPVAPAAAVVPV
NVAPLPAVEAAAPIVPPVSTPLPAATPAPAQPTVPAEALTEIAATAASASAPVQVAPVET
AKPVEAATQAPAYVAPAVPAQPEAAAAVTEVVTQKPVSVSVTPVVEQGALESTLQSVGLV
WVHTDADKHRAAKEAAAQAAPAPRVQRQRRTAAPVNTGPMEQVETQTSSDHGA
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggccattgtcgat
gggcaaaaactcatcgacatcgatatcgagacggccggacgcgaacagcgtaaaggcaac
atctacaagggtgtcatcacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggccgccacggcttcctgccgttcaaggaagtcgcacgcgcgtacttccgcgac
ggcgccgatgtgcgcaatgcgcgcattcaggatgccctgtccgaaggtcaggaactcatc
gttcaggtggaaaaggaagagcgcggtaacaagggcgcagccctgaccacgttcatctcg
ctggccggccgttacctcgtgctgatgccgaacaacccccgtggcggtggcgtgtcgcgc
cgcatcgagggtgaagatcgtcaggaactgcgcgaaacgatggggcagctcgaactgccc
gaaggcatgagcatcatcgcccgcacggccggtatcggtcgctcggccgaagagctccag
tgggacctgaactacctgctgcaactgtggcacgccgtcgaaggcgccgccaacaacatc
gaactgccgcgcgactcggcgctgatctatctcgaatcgagcctggtcatccgcgccatc
cgtgactatttccaaccggatatcggtgaaattctcatcgatacggaagaaatttccgaa
caggcccgcaacttcatgcaggtggtcatgcccgaccatctcaatcgcgtgaagcagtac
cgcgacgacgtgcccctgttctcgcgtttccagatcgaacaccagatcgaaacggcttac
tcgcgtcaggtgccgctgccctcgggcggcgccatcgtgatcgaccacaccgaagcactg
gtgtcgatcgacgtgaactcggcgcgcgccaccaagggtgcggacatcgaagaaaccgcc
ctgcgcaccaacctggaagctgccgacgaagtcgcacgccagttgcgtctgcgtgacctc
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggatgcgctcaagcacgatcgtgcccgcgtccagatgggcaagatt
tcgcgtttcggcctgatggaactctcgcgtcagcgcctgcgcccgtcgctctcggaaggc
acgcacgtgacctgcccgcgttgcaatggcaccggccacatccgcgatgccgaatcgtcg
gcactacaagtcctgcgcatcatccaggaagaagcgatgaaggagcacacggcagcaatt
cactgccaggtgccggtcgaagtcgccgccttcctgctcaatgaaaagcgtcaggaaatc
aacaagatcgaagcgcgcttcaaggttggcgtgctgctgatcccgaacaagcacctcgag
acgccgcattacaagctggagcgcctgcgcttcgacgacccgcgtctggacacgcccaag
gcaagctacgcgctggccgaggaagccgcccgcgcatcggaagacgatccggccggttac
agcaagaagaaggaagacgtgcgtccgcgtcaggaagccgccgtcaagggcatcacgccc
gagcagccggccccggcagcgcagccgcgcccggaaccggtcgccgcaacccctgccccg
gcagccccggtgcgcagcggtggtttcatcggtttcgtgaagcgtctgctgggccttgag
cctgccgcaccggcaccggtgaaggacgaagcgccggccaagccagcagcccgtccgccg
cgcgagcgtcatgatcgtccgcatcagcaaaaccgtaatcgccgcggcaacgcccgtgac
gagaacaagaccggcaaggacaacgcaggccaaccggcacgcgaaggccgcgctgcgcgt
ccggaacgtgccgagcgcacggaccgtaacgagcaacgtgccgatcgtaatgagcgcaac
gaacgcggcgaccgcacggagcgcaatgagcgcaccgaacgtaatgaccgcaatgagcgt
ggcgatcgtaacgaacgcaacgaacgtcaggaaggccgcgacaagcgcgagcgcgacgat
gcacaacgtcaaccggcgcaggaagtgcgcgccgaagacggtcgcgaaccgcgtgaaggc
cgcgaacgtggcaatcgccgcgatcgtaaccgccgtcagaccgaaggtgccgagggtcaa
caagcggctgcaccgcaacgcgcggcgcaagtggctgccccgctgagcgccggtgaagac
gccgagtacgatcagcacgaccgtttggccgcacaaggtgcgcaagccgaaggcgcccaa
ggcgtggccggtgacgagagcgaacaggcgaacgaagagcgtcgccgcagccgtcgtcgc
ggtcgtcgtggtggccgtcgcgagcgcgaagccggtgagcagcaactgcatgctgacggc
gagcaaggcgaaggcgcggaaaacgccggtaatgcgggtaacgctgatcatgcaggcagc
gcagcgtcggaatacgctgcggcgccggcgttgacggaagaacgcgctgagcatgtggca
ccgcaagccgttgcaccggcagtcgtagcggccgccgctaccgccgccacggttgctgcc
gcacaggttcacaccgaacctgcgcaggcacccgctcagacgttccaaccggttgaaacc
aagcccgccgtcgcaacgccgacgctggagcaggtgcaaacccaagcggccccggtcgcc
cccgcagcgccggtggttgccgtcgcaacggtgagcgaagccgccccggtggcaacgccg
gaagtgccggtgcaagtcgtgacggaaccggtcgcaccggctgctgctgtcgtgcccgtg
aacgttgcgccgctgcccgccgtggaagctgccgcaccgatcgtgccgccggtcagcacg
ccgctgccggcagcaacgccggccccggcacagccgacggtaccggccgaagccctgacc
gaaatcgccgcaacggccgccagcgccagcgcgccggtgcaagtggccccggtagaaacc
gccaagccggtggaagccgccacgcaagcgcctgcctacgtggcaccggccgtcccggca
caaccggaagcggccgctgcggtcacggaagtcgtgacgcagaagcccgtgtcggtcagc
gtgacgccggttgtggagcaaggtgcgttggaaagcacgctccagagcgtgggtctggtc
tgggttcacaccgatgccgacaagcatcgcgcagccaaggaagccgcggcgcaagccgca
ccggcaccgcgcgtgcaacgtcagcgtcgtacggctgcaccggtcaacaccggcccgatg
gagcaagtggaaacacagacgtcgtcggatcacggtgcctga
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