Pandoraea norimbergensis: AT302_06620
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Entry
AT302_06620 CDS
T04226
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pnr
Pandoraea norimbergensis
Pathway
pnr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AT302_06620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnr03021
]
AT302_06620
03400 DNA repair and recombination proteins [BR:
pnr03400
]
AT302_06620
Enzymes [BR:
pnr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AT302_06620
Transcription machinery [BR:
pnr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AT302_06620
DNA repair and recombination proteins [BR:
pnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AT302_06620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
ApbA_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
ALS59481
LinkDB
All DBs
Position
complement(5832488..5836711)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKALLDLFKQVQQDEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEAGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAIDIDSEVERLREELKVTGSEAKIKKFAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGVATTIKAAKKEVENQTAVVWDILEEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRDKINGRGEGISFADVSEVLRAYDNK
EVELASRVNVRITEMVHNEDTSEGAPKFVPKITLYPTTVGRAILSEILPPGLPFSVLNKS
LKKKEISKLINTAFRRCGLRETVIFVDKLMQSGFKLATRAGISICVDDMLVPTKKEELIG
EASKKVKEYDRQYMSGLVTAQERYNNVVDIWGATGDAVGKAMMEQLSTEETVDRDGKTVR
QESFNSIYMMADSGARGSSAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVSDVVNPETQETVYEAGTLLDEDVVETIESLGIDEVRVRTPLTCDTRYGLC
ALCYGRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSN
GTVRFTATMRYVTNGRGEQIVISRSGEILITDDHGRERERHKVPYGATLLHLDGSQVKAG
TQLGTWDPLTRPIITEHGGFARFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPASKNV
RPQVKLLDENGVEVKIPGTDHAVTIGFQVGALITIKDGQQVPVGEVLARIPTEAQKTRDI
TGGLPRVAELFEARAPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIPKEKQ
VLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALARYIVDEVQDVYRLQGVKINDKHIEV
IVRQMLRRVQIVDSGDTRFITGEQVERSDMLDENDAMNALDKRPAQYENVLLGITKASLS
TDSFISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKARKARETS
DRERHDQIALEEAFAPMPASVEEPTAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccagcaggacgaacagttcgacgcgatc
aagatcggtctggcttcgccggacaagatccgctcgtggtcgttcggtgaagtcaagaag
ccggaaacgatcaactatcggacgttcaagcccgagcgtgatggtctgttctgcgcaaag
atcttcggtccgatcaaggattacgaatgcctttgcggtaagtacaagcgtctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtggaagtcacgctggcaaaggtgcgtcgcgaa
cgcatgggccacattgagctggcctcgccggtcgctcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtggtgatcgaagcgggtatgacgccgctcaaagcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgaaatg
ggcgcggaaggcgtgcgtgaactgctgcgcgcgatcgacatcgattcggaagtcgagcgt
ctgcgcgaggagctcaaagtcacgggctcggaagccaagatcaagaagttcgccaagcgc
ctgaaagtgctcgaggcattccagcgctcgggcatcaagcccgagtggatggtgctcgaa
gtgctgccggtgctgccgcccgaactgcgcccgctggtgccgctcgacggtggccgcttc
gcgacctcggacctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgagctgaaggcaccggacatcatcgtgcgcaacgaaaagcgcatgttgcag
gagtcggtggattcgctgctcgataacggtcgtcgcggcaaggccatgacgggtgccaac
aagcgtccgctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacttgctcggtaagcgcgttgactactcgggccgttcggtgattaccgtgggcccgacg
ctcaagctgcaccagtgcggcctgccgaagctgatggcgctcgaactcttcaagccgttc
attttccacaagctggaagtgatgggcgtggccacgacgatcaaggccgcgaagaaggaa
gtcgagaaccagacggcggtggtgtgggacatcttggaagaggtgatccgcgagcatccg
atcatgctgaaccgcgcaccgacgctgcaccgcctgggtattcaggcgtttgagccggtg
ctgatcgaaggcaaggcaattcagcttcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgtaccctgatgctggcctcgaacaacgtgttgttcccggctaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacgcgtgacaagatcaacggc
cgcggcgaaggcatttcgtttgctgacgtctcggaagtgctgcgtgcgtacgacaacaag
gaagtcgaactggcttcgcgcgtgaacgtgcgtatcaccgagatggttcacaacgaggac
acctcggaaggtgcgccgaagttcgtgccgaagatcacgctgtacccgacgactgtcggc
cgcgcgattctgtccgaaattctgccgccggggctgccgttctcggtgctgaacaagtcg
ctcaagaagaaggaaatctcgaagctgatcaacacggcgttccgccgttgcggtctgcgc
gagacggtgatcttcgtcgacaagctgatgcagtctggcttcaagctcgcaacgcgtgcc
ggtatctcgatctgcgtcgacgacatgctcgtcccgacgaagaaggaagagctgatcggc
gaagcgtcgaagaaggtcaaggaatacgaccgtcagtacatgtcgggtctggtcacggcg
caagagcgttacaacaacgtcgtggacatctggggtgcgaccggcgacgccgtgggcaag
gccatgatggaacagctctcgacggaagaaacggtcgatcgcgatggcaagaccgtgcgt
caggaatcgttcaactcgatttacatgatggccgactcgggtgctcgcggttcgagcgct
cagattcgtcagctcgccggtatgcgtggcctgatggccaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggcggatacggcactgaagacggctaactcgggttac
ctgacgcgtcgtctggtggacgtgacgcaggatctggtcgtggtcgaagacgattgcggc
acgagcaacggcgtagcaatgaaggcgctggtcgagggcggtgaagtggtcgaagccctg
cgtgaccgtattctgggtcgcgtggccgtgtcggatgttgtgaatccggaaacgcaagag
acggtgtacgaggccggcacgctgctggacgaagacgttgtcgaaacgatcgaatcgctg
ggtatcgacgaagtgcgcgtgcgcacgccgctgacctgcgatacgcgttacggtctgtgc
gcactgtgctatggccgtgacctgggtcgcggttcgcgtgtgaacgtcggcgaagccgtc
ggcgtgatcgcagcacagtcgatcggtgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcctcgtcgatcgaagccaagtcgaac
ggtacggttcgcttcacggcaacgatgcgttacgtgacgaatggtcgcggtgagcagatc
gtgatttcgcgttcgggtgaaatcctgatcacggatgatcacggtcgcgagcgcgagcgt
cacaaagtgccgtacggcgcaacgctgctgcatcttgacggttcgcaggtcaaggccggt
acgcaactcggtacgtgggatccgctgacgcgcccgatcattaccgaacacggcggtttc
gcccgattcgagaatgtcgaggaaggtgtcacggttgccaagcagatcgacgatgtgacg
ggtctgtccacgctggtcgtgatcgatccgaagcgtcgtggtccggcgtcgaagaacgtg
cgtccgcaggtcaagctgctcgacgaaaatggtgtggaagtgaagatcccgggtaccgat
cacgctgtgacgatcggcttccaggtgggcgcactgatcaccatcaaggacggtcagcaa
gtgccggtgggtgaagtgctcgcacgtatcccgaccgaagcgcaaaagactcgcgacatt
accgggggtctgccgcgtgtggccgaactgttcgaagcacgtgcaccgaaggacgccggc
attttggccgaagtcacgggtacgacgtcgttcggtaaggacaccaagggcaagcagcgt
ctggtcattaccgatctggacggcaaccagcacgagttcctgattccgaaggaaaagcag
gtgctggtgcacgacggtcaggtggtgaacaagggcgaaatgatcgtggacggcccggcc
gatccgcacgacattctgcgcttgcagggtattgaggcactggcacgttacatcgtcgac
gaagttcaggacgtgtaccgtttgcagggtgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcgtcgtgtgcagatcgtcgattcgggcgatacgcgcttcatc
accggcgaacaggtcgaacgctcggacatgctcgacgagaacgacgccatgaacgctttg
gacaagcgtccggcgcagtacgagaacgtgttgctgggtattacgaaggcgtcgctgtcg
acggactcgttcatctcggcggcatcgttccaggaaacgacgcgcgtgttgaccgaagcc
gccatcatgggcaagaaggacgacctgcgtggcctgaaggaaaacgtcatcgtcggccgt
ctgatcccggcaggtacgggtctggcgtatcacaaggcccgcaaggcccgcgaaacgtcg
gatcgcgagcgtcacgaccagatcgctctggaagaggcgtttgccccgatgcccgcatcg
gtggaagagccgacggcagagtaa
DBGET
integrated database retrieval system
