Pandoraea norimbergensis: AT302_06725
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Entry
AT302_06725 CDS
T04226
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pnr
Pandoraea norimbergensis
Pathway
pnr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pnr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AT302_06725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnr03021
]
AT302_06725
Transcription machinery [BR:
pnr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AT302_06725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_24
HTH_IclR
GerE
HTH_29
HTH_7
HTH_11
TnsD
Xre-like-HTH
HTH_28
HTH_40
HTH_Tnp_ISL3
HTH_20
HTH_31
Terminase_5
HTH_38
HTH_10
HTH_3
HTH_Crp_2
HTH_AsnC-type
HTH_17
Motif
Other DBs
NCBI-ProteinID:
ALS59492
UniProt:
A0A0U2XYQ4
LinkDB
All DBs
Position
complement(5859015..5859527)
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AA seq
170 aa
AA seq
DB search
MPADDTLQRDALLGLYNDHHGWLHGWLHRKTGCSHRAADLAHDTFIRLLERDPPRMLASP
RAFLTTVAQRVLYNYWRREQIERAYLEALAQQPEAVAPSPEERAIVLETLLEIDRCLDGL
PPPVKRAFLLAQLDGLSHAEIAAELGISLATVKRYLVRAGTQCFFAMEAA
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgacgacacgctgcaacgcgacgcgttgctgggactctataacgaccatcac
ggctggcttcacggctggctgcatcgcaagaccggttgctcgcatcgggcggccgatctt
gcgcacgacacgttcatccggctgctcgaacgcgacccgccacgcatgctcgcgtcgccg
cgcgctttcctgaccacggtggcgcagcgtgttctctataactactggcgtcgcgaacag
atcgagcgcgcgtatctcgaagcgctggcccagcagcccgaagccgtcgccccttcacca
gaagagcgcgccatcgtgctcgagacgctgcttgagatcgatcgctgtctcgacggtcta
cctcccccggtcaaacgcgcctttctgctggcccagctcgatggcctgtctcatgccgag
attgcggccgaactgggcatctcgctcgcgaccgtcaaacgctatctggtgcgtgccggt
acgcagtgcttcttcgcgatggaggcggcatga
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