Pandoraea norimbergensis: AT302_11040
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Entry
AT302_11040 CDS
T04226
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pnr
Pandoraea norimbergensis
Pathway
pnr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pnr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AT302_11040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnr03400
]
AT302_11040
Enzymes [BR:
pnr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AT302_11040
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AT302_11040
DNA repair and recombination proteins [BR:
pnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AT302_11040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ALS60225
LinkDB
All DBs
Position
650136..650966
Genome browser
AA seq
276 aa
AA seq
DB search
MPELPEVEVTRRGIVPHVAGTRVARIDVRNASLRWPVPAGLDALLRGEMLIDVTRRGKYL
LLEYAPGWLLVHLGMTGTLRVLPEPEALPVAGIHDHIDLVFERCALRYRDPRRFGAVLFH
PRTAGDVLGHALLANLGVEPFSDAFDGNLLYAGTRGRSVAIKQALLAGSIVVGVGNIYAS
ESLFRAGINPRLAAGKLSRPRCEKLAIAVRETLAAAIEKGGSTLRDFVGSDGKSGYFQLE
YFVYDRAGQPCRVCGTPIRQIVQQQRSTFFCPHCQK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactccccgaagtcgaagtcacccgccgcggcatcgtgccgcatgtggcgggc
acgcgcgtcgctcgcatcgacgttcgtaatgcatcgttgcgctggccggtgcccgccggg
ctcgacgcattgctgcgtggcgagatgctcatcgacgtgacccgtcgcggcaaatacctg
ctgctcgaatatgcgccgggctggttactggtgcatctgggcatgaccgggacgttgcgc
gtcctgcccgagccggaagcactgccggtcgccggcattcacgaccacatcgatctcgtg
ttcgagcgctgcgcgttgcgctatcgcgatccgcgccgcttcggcgccgtgctgtttcat
ccgcgcacggccggcgatgtgctcggtcatgcgttgctcgccaatctcggcgtcgaaccg
ttctcagacgcgttcgacggcaacctgctttacgcgggcacgcgcgggcgctccgtggct
atcaagcaagcgctactggcaggctcgatcgtcgttggcgtgggcaatatctacgcgtcg
gaaagtctctttcgtgcgggcatcaatccacggcttgctgccggaaaactgtcgcgtccg
cgttgtgaaaagctcgccatcgcggtgcgggaaacgctcgccgcagcgatcgaaaaaggc
ggcagcacgttgcgcgatttcgtcggcagcgatggcaaaagcggttatttccaacttgaa
tatttcgtctacgaccgggcagggcagccgtgcagagtgtgcggcacgccgatccggcag
atcgtgcagcagcagcgctccacgttcttctgcccgcactgccagaaatga
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