Pandoraea norimbergensis: AT302_17850
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Entry
AT302_17850 CDS
T04226
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pnr
Pandoraea norimbergensis
Pathway
pnr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AT302_17850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnr03400
]
AT302_17850
Enzymes [BR:
pnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AT302_17850
DNA repair and recombination proteins [BR:
pnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AT302_17850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SNF2-rel_dom
AAA_25
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALS61361
LinkDB
All DBs
Position
complement(2187865..2191329)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSANAISRNTVPVPLVKAGQRYAFAGAHASSDALLIARYFEANRERMPLLAVVCAQATD
ALRLQQELKWYAPEARVRLLPDWETLPYDTFSPHQDLISERLATLHDLGEKRCDIVLVPA
TTALYRMAPASFMAAYTFYFRQGERLDEAKLKSQFTLAGYEHVSQVMRPGEYCVRGGLID
LFPMGSPLPYRLDLFDDTVDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDEPARTAFRGR
WREVFEGDPSRSTIYKDMGSGVPSAGIEYYLPLFFEETATLFHYLPPDAQLVFVGDLEGA
IQRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFTFAKPFARLTLAKPGDGSWAIPL
PTISVNRRADDPLAALRAYLARTPARVLLCADSAGRRETLLQLLHDNDLRPVSVESLEDF
LTSDARFAIGVAPLASGFLLPTEDLAFITENELYEGLARRVGKRRQEQATSVDSMVRDLA
ELKVGDPVVHSQHGIGRYQGLISMDLGEGETEFLHLDYSGQSKLYVPVSQLHLISRYSGA
DPDTAPLHSLGSGQWEKARRKAAQQIRDTAAELLNLYARRAARSGYAFELSPRDYEKFAD
SFGFEETPDQAAAINAVMADMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVALL
APTTLLAEQHAQTFSDRFADWPVRIAELSRFKTTKEVNTSVKAINDGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKLELEALVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKSLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVSALKAGREPDLNAPLAVTTEINLHVPAILPSD
YCGDVQERLSLYKRLANGTNADAIDTIQEELVDRFGKLPQQAQALIETHRMRLLAKPLGI
TKIDASEEAIALQFEPTPAVDPMRIIELVQKHRHIKLAGQDKLRIEAKHPQLTDRVRAIK
ETLRAISSPGARAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgctaacgccatatcccgtaataccgtgcctgtgccgctcgtgaaagcggga
cagcgttacgccttcgccggtgcccacgcgtcgtctgacgccctgctcatcgcccgctac
ttcgaagccaatcgggagcgcatgccgctgctcgcggttgtctgcgcgcaggcgaccgac
gcgctgcggctccagcaagaactcaagtggtacgcgcccgaggcgcgcgtgcgcctgctg
cccgactgggaaacgttgccttacgacacgttctcgccgcaccaggacctgatctcggaa
cggctggccaccttgcacgatctcggcgaaaaacgctgcgacattgtgctcgtgcccgcc
accaccgcgctctaccgcatggcgccggccagcttcatggcggcctacacgttctacttc
cggcaaggcgaacggcttgacgaagcgaagctgaagtcgcagttcacgctcgccggttac
gagcacgtgtcgcaggtgatgcgtcccggcgagtactgcgtgcgcggcggtctgatcgat
ctgttcccgatgggctcgccactgccctatcgtctcgatctgttcgacgacacggtcgac
agcatccgcgctttcgatccggacacgcagcgcagcctctatccggtcaaggaagtgcgc
ctgctcccgggccgagaattcccattcgacgaacccgcccgcaccgcgtttcgcggtcgc
tggcgcgaggtgttcgaaggcgacccgagccgcagcacgatctacaaagacatgggcagc
ggcgtgccctccgcgggcatcgagtactacctgccgctgttcttcgaagagacggccacg
ctcttccactatctgccgcccgacgcccagttggtgttcgtcggcgatctggaaggtgcg
atccagcgcttctggaacgacacgcgtcagcgctacaactttctctcgcacgaccgcgag
cgcccggtgctgccgcccgagcaactgtttctgctcgatcaggacttcttcacgttcgcc
aagccgttcgcccgcctgacgctggcgaagcccggcgacggcagttgggcgatcccgctg
ccgacgatctcggtcaaccgtcgcgccgacgatccactggccgcgctacgcgcgtatctc
gcccgcacgcccgcgcgtgtgctgctctgcgccgactccgcgggccgtcgcgagacgctg
ctgcaactgctgcacgacaacgatctgcgcccggtctcggtcgaatcgctggaagatttt
ctgacctcggatgcgcgcttcgcgattggcgtcgcaccgctggcctcgggctttctgctg
ccgacggaagacctcgcgttcatcaccgagaacgagctttacgaaggcctggcacgccgt
gtcggcaaacgccgtcaggaacaggcgacgtcggtcgactcgatggtgcgcgacctcgcc
gagctcaaggtcggcgacccggtggtgcatagccagcacggcatcggccgctatcagggg
ctgatcagcatggacctcggcgaaggtgaaaccgagttcctgcatctcgactactccggc
cagagcaaactctacgtaccggtctcgcaactgcacctgatctcgcgctacagcggcgcc
gaccccgacaccgcgccgctgcactcgctgggctcgggtcaatgggagaaggccagacgc
aaggccgcccagcagattcgcgacacggcggccgagctgctcaatctgtacgcgcgtcgc
gccgcacgctcgggctatgcgttcgaactttcgccgcgcgactacgaaaaatttgccgac
agcttcggcttcgaagagacccccgatcaagccgccgccatcaacgccgtcatggccgac
atgaccagcggcaagccgatggaccggctggtgtgcggcgacgtcggcttcggcaagacc
gaagtggcgttgcgtgccgcgttcatcgccgtgctcgacggcaagcaggttgccctgctc
gcccccacgacgctgctcgccgaacagcatgcccagaccttctccgaccgcttcgccgac
tggccggtgcgcattgccgaactctcgcgtttcaagaccaccaaggaagtgaatacgagc
gtgaaggccatcaacgacgggcaggtcgacatcgtgatcggcacgcacaagctgctctcg
aacgacattcagttccagcgtctggggctggtcatcatcgacgaggaacaccgcttcggt
gtccgtcagaaggaagcgctcaaggcactgcgcgccgaagtcgacgtgctcacactcacc
gcaacgccgattccgcgcacgctgggcatggcgctcgaaggcctgcgcgacttctcggtg
atcgctaccgccccgcaaaaacgtctggccatcaagaccttcgtacgccgtgaagaagac
ggcgtgattcgcgaagccatgctgcgcgaactcaagcgcggcggtcaggtgtacttcctg
cacaacgaagtcgagactatcgagaaccgcaagctggaactggaggcactggtgcccgaa
gcgcgcatcgtcgtcgcccacgggcagatgcacgagcgcgatctcgagcgcgtgatgcgc
gacttcgtgacccagcgcgccaacgtgctgctgtgcacgacgattatcgaaaccggcatc
gacgtgccgaccgccaacaccatcctgatgcaccgcgccgacaagttcggtcttgcgcag
ttgcaccagttgcgtggccgcgtcggccgctcgcaccatcaggcctacgcttacctgctg
gtgcacgatccgaaatcgctcaccaagcaggcccagcgccgtctggaagcgattcagcaa
atggaagaactcggcgccggcttctatctggccatgcacgatctggaaattcgcggcgcg
ggcgaagtgctcggcgacaagcagtcgggagaaatccacgagatcggcttccagctttac
accgacatgctcgccgacgccgtaagcgcactcaaggctggccgcgagccggacctgaac
gcgccgctggcagtcaccaccgagatcaacctgcacgtgccggccatcttgccgagcgac
tactgtggcgacgtgcaggagcgtctgtcgctgtacaagcgcttggccaacggcacgaac
gcagacgcgatcgacacgattcaggaagaactggtcgaccgcttcggcaagctgccgcag
caggcgcaggcgctgatcgagacgcaccgcatgcgcctgctcgccaagccgctgggcatc
accaagatcgatgcgagcgaagaagccatcgccctgcaattcgaacccacgcccgccgtg
gacccgatgcgcatcatcgaactggtgcagaagcatcgccacatcaagctggccggtcag
gacaaactgcgcatcgaagcgaagcacccgcaactgaccgatcgcgtgcgtgcgatcaag
gaaaccttgcgcgccatcagttcccccggcgcacgcgcggcctga
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