Pandoraea norimbergensis: AT302_22915
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Entry
AT302_22915 CDS
T04226
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pnr
Pandoraea norimbergensis
Brite
KEGG Orthology (KO) [BR:
pnr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnr03019
]
AT302_22915
Enzymes [BR:
pnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT302_22915
Messenger RNA biogenesis [BR:
pnr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AT302_22915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
DEAD
HA2_C
AAA_19
AAA_22
NACHT
T2SSE
nSTAND_NTPase5
nSTAND3
AAA_30
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALS62215
UniProt:
A0ABN4JM78
LinkDB
All DBs
Position
complement(3417713..3421828)
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AA seq
1371 aa
AA seq
DB search
MASDERNRQSKPPKPTVPAAGPKRGRENAGERRMTAAQRAERDAERLAAKQAAANRIPEI
QFPEALPVSGRREEIARAIAGHQVVIVSGETGSGKTTQLPKICLALGRGLGAGGTGLIGH
TQPRRIAASATARRIADELNTPLGEIVGFKVRFNDTLSNGASVKLMTDGILLAETQTDPL
LRAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFARHFGTMDGE
TLHPAPVIEVSGRLYPVEVRYRPIQDDARIANAEGREGSRASARDRDRDLMDGIVDAVDE
LCREGSGDVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSATDQERVFKASNARRI
VLATNVAETSLTVPGIRYVVDAGTARVKRYSYRNKVEQLQIESISQAAANQRAGRCGRVA
DGVCIRLYDEADFQSRVRFTDPEILRSSLAAVILRMQSLRLAKVEDFPFIEPPPGRAIAD
GYQLLNELGAVDDTNQLTPLGRELARLPLDPRVGRMILAARDQQSLREVLIIAAGLAVQD
PRDRPIEAQDAADNAHRKFADEKSEFLSWIKMWRWFDEAIAHKKSNRLLGQACRENFLSQ
LRLREWRDVHSQLLTVVREQGWRLNESEATYEQVHLALLAGLLGNIGCKADDDPHFLGAH
GIKFHIWPGSSLVKKAGRWVMAGELVETSRLYARCIARIEPEWIERVGKHLVKTSLSDAH
WEKKAAQVTAYERGTLYGLTIYARRRMNFGPRDPRRAREIFLRSALVEGEWETKLPFYAH
NRKLIADIEQLEHKSRRQDVLVDDELIYAFYDAQVPEDLYDGTSFEHWYRETAKGTPKLL
YLVRDDLMRHEAAGVTTDLFPKKTVIAGIEMVLTYHFEPGSPRDGVTLAVPLFALNQVDA
RRCEWLVPGMLKEKAHLLMKSLPQKLRRHFVPLPEYAAGFVDRATFGQGALLDALMADAR
EQTGVMLSPSDFKLEMLPAHLTMNFKIVDEHGRQLGMGRNLAQLRAELGQQAQRTFQELA
AKSGTTPTGVVASGAGSDGGGRQSAKQVGKGDMTGAAGAAGGANGAKGAASRGAGAQPGA
SAAAVEPGRYDNLTTWSFGELPEMLEIRRGGQTLFGYPALVDRGDHCDLEVFDDPDEAQR
QHRAGLRRLFAIQLREQVKFLEKNIPGLQQMAMQYMNLGTQEELRDQIVDLALERACLQL
PWPSDNTSFVARKDEGRGRLTLLAQEIARLAGQILTEYAALQKKLAQAKPFAQAYADLTA
QLQRLIGKRFLIDTPYPQLAHYPRYLKAMAARIDKLKADPTRDARAMSELGPLLQNWQRA
TSQRRDHGDARLEEFRWLLEELRVSLFAQELRTPMPVSVKRLHKVWEALQR
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgatgaacgaaatcgacaatctaagcccccgaagccgacagtgccggctgcg
ggacctaaacgcggacgtgagaatgccggcgagcgccgcatgacggccgcccaacgggct
gaacgcgacgccgagcggctggccgcgaagcaggccgccgccaaccgaattcccgagatc
cagtttcccgaagcgctgccggtgtccggccgccgcgaggagatcgcccgcgccatcgcg
ggccatcaggtcgtgatcgtgagcggcgaaaccggctcgggcaagaccactcagcttccc
aagatctgtctcgcgctcggccgcgggctgggcgcgggcggcacaggcctcatcggccac
acgcagccgcgccgcatcgcggcctcggccacggcacgccgtatcgccgacgaattgaac
accccgctcggcgaaatcgtcggcttcaaggtgcgcttcaacgacacgctctcaaacggc
gcgtcggtcaaattgatgaccgacggcattctgctggccgagacgcagaccgacccgctg
ttgcgtgcgtacgacaccatcatcatcgacgaggcgcacgagcgcagtctgaacatcgac
ttcctgctcggctacctcaagcaactgctgccgcgccggcccgacctgaaggtgatcatt
acctcggcgacgatcgacgcagaccgcttcgcccgtcacttcggcacgatggacggcgaa
acgctgcaccccgcgccggtgatcgaagtcagtggtcgtctgtaccccgtggaggtgcgc
tatcgcccgattcaggacgacgcccgcattgccaacgcagaaggccgcgagggcagccgc
gccagcgcgcgcgaccgcgaccgcgatctgatggacggcatcgtcgacgcggtggacgaa
ctgtgccgcgaaggctcgggcgacgtgctcgtgtttctgcccggtgagcgtgaaatccgt
gaagcggccgaggccctgcgcaagcaccatccaccacacacggagattttgccgctgttt
gcccggctctcggcgacggaccaggagcgcgtgttcaaggcgtcgaacgcgcggcgcatc
gtgctggccactaacgtggcggaaacctcgctcacggtgccgggcattcgctacgtggtg
gacgcgggcacggcgcgcgtgaagcgctattcctaccgaaacaaggtcgaacagcttcag
atcgaatcgatctcgcaggccgcggcgaaccagcgcgccgggcgttgcggccgggtggcc
gacggtgtgtgcatccgcttgtacgacgaagcggacttccagtcgcgggtgcgctttacc
gatccggaaattctccgctcgtcgctcgctgccgtcattttgcggatgcaatcgctgcgt
ctggcgaaggtcgaggacttcccgttcatcgagccgccgccgggccgcgcgattgccgac
ggttaccagttgctgaacgaactgggtgccgtggacgacaccaatcagctcacgccgctc
gggcgcgaactggcccgtttgccgctggacccacgcgtcggccgcatgattctcgccgcg
cgagatcagcagtcgctgcgcgaagtgctcatcatcgccgccggactggcagtgcaggac
ccgcgcgatcggcccatcgaggcgcaggacgccgccgacaacgcccatcgcaagttcgcc
gacgagaagtccgaattcctctcgtggatcaagatgtggcgctggttcgacgaggcgatt
gcgcacaagaagtcgaaccgcttgctcgggcaggcctgccgcgagaacttcctctcgcag
ttgcgtctgcgtgaatggcgcgatgtgcacagccagttgttgacggtggtgcgcgagcaa
ggctggcgcctcaacgagtcggaagcgacgtacgaacaggtgcaccttgcgttgcttgcc
ggtctgctcggcaacatcggctgcaaggccgacgacgatccgcatttcctcggcgcccac
ggcatcaagttccatatctggccggggtcgtcgctggtgaagaaggcgggccgctgggtg
atggccggtgaactggttgagacgagccgcctgtatgcgcgctgtatcgcccggatcgag
ccggaatggatcgagcgcgtgggcaagcatctggtgaagacctcgctgtccgatgcgcat
tgggaaaagaaagccgcgcaggtcaccgcttacgagcgcggcacgctgtacggcctgacg
atctatgcgcgccgccggatgaatttcggcccgcgtgacccgcgtcgcgcccgcgaaatt
ttcctgcgcagtgcgctggtagaaggcgaatgggaaaccaagctgccgttctacgcgcat
aaccgcaagctgatcgccgacatcgaacagttggaacacaagtcgcgccggcaggacgtg
ctggtcgatgacgaactgatttacgcgttttacgacgcgcaggtgcccgaggatctgtac
gacggcacgagcttcgaacactggtatcgcgagacggccaagggcacgccgaagctgctg
tatctggtgcgcgacgacctgatgcgccacgaagcggccggcgtgaccaccgatctgttc
ccgaaaaagacggttatcgcgggcatcgagatggtgctgacgtaccacttcgaaccgggt
tcgccgcgcgacggcgtcacgcttgccgtgccgctcttcgcgctcaatcaggtggacgcg
cgccgttgcgagtggctggtgccgggcatgctcaaggaaaaagcgcacctgttgatgaag
tcgttgccgcagaagttgcggcgtcacttcgtgccgctgcccgagtacgcagcgggcttt
gtcgaccgtgcgacgttcgggcagggggccttgctcgatgcactgatggccgatgcgcgc
gagcagaccggtgtcatgctcagcccgagcgatttcaagctggagatgttgcctgcgcac
ttgacgatgaacttcaagatcgtcgacgagcacgggcgccaactcggcatgggccgtaac
ctcgcgcaactgcgcgcagaactcggtcagcaggcgcaacgcacgttccaagagctcgcg
gcaaagagcggcacgacgccgactggcgtggtggcgagtggcgcgggcagcgatggcggt
ggccgtcagtctgccaagcaggttggcaagggcgatatgaccggcgcggcaggggctgcg
gggggggcaaatggcgcaaagggcgcagcctcgcgcggcgcgggcgctcagccgggcgca
tctgcggcggcggtggagccgggccgatacgacaacctcacgacgtggagcttcggcgaa
ctgcccgaaatgctcgaaatccggcgtggcgggcagacgttgttcggctatccggcactg
gtcgatcgtggcgatcactgcgatctggaagtgttcgatgatccggacgaagcccagcgg
cagcatcgcgccgggctgcggcgtctgttcgctattcagttgcgcgaacaggtgaagttc
ctcgagaagaacatccccggcctgcaacagatggcgatgcagtacatgaatctgggcacg
caggaggagttgcgcgatcagatcgtggatctcgcgctggagcgcgcttgtctgcaattg
ccgtggccgagcgataacacgtcgttcgtcgcgcgcaaggacgaagggcgcggccggctc
acgctgctcgcgcaggagatcgcgcggctggcggggcagattctcacggaatatgcggcc
ttgcagaagaaactggcgcaggcgaagccgtttgcgcaggcctatgccgacctcacggcg
cagttgcagcggctgatcggcaagcggttcctgatcgatacgccgtacccgcaactcgcc
cattacccgcgctatctgaaggcgatggcggcgcgtatcgacaagctcaaggccgatccg
acccgcgacgcgcgggcgatgagcgaactggggccgctgctgcaaaactggcaacgggcg
acgtcgcagcgccgcgaccacggcgatgcgcgtctggaggagttccgctggctgctcgaa
gagctgcgagtgtcgctcttcgcgcaagagctgcgcacgccgatgccggtgtcggtcaaa
cgtctgcacaaggtctgggaggcgttgcagcgctga
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