Erythrobacter neustonensis: A9D12_07470
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Entry
A9D12_07470 CDS
T04416
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pns
Erythrobacter neustonensis
Brite
KEGG Orthology (KO) [BR:
pns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pns03016
]
A9D12_07470
Enzymes [BR:
pns01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A9D12_07470
Transfer RNA biogenesis [BR:
pns03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A9D12_07470
Prokaryotic type
tRNA splicing ligases
A9D12_07470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ANK12810
UniProt:
A0A192D3X2
LinkDB
All DBs
Position
complement(1609888..1611108)
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AA seq
406 aa
AA seq
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MTGYELHEVEGGAPIKAWTRGVPVDDKARAQLARAAQMPFIFKHVAAMPDVHVGIGATVG
SVIPTKGAVIPAAVGVDIGCGMMAARTSLMASDLPDNLEGIRSAIERAVPHGRSSGRGGR
DKGAWGDPPSEVIEAWATLVRRFDRIVAKYPRLERTNHLVHLGTLGTGNHFIELCLDEAQ
AVWVMLHSGSRGVGNAIGTFFIELAKQDMRKWHINLPDADLAYFPEGTDHFDDYVEAVEW
AQDFARLNRQVMMTHVIAALRSQIAKPFEAACEAVNCHHNYVTRENHFGENVLVTRKGAV
RAAKGTLGIIPGSMGAKSFIVRGLGNPDSFDSCSHGAGRIMSRTEAKKLVTLDEHIADTA
GIACRKDEGVIDETPRAYKPIEKVMAAQADLVEIVHMLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaccggatacgaactgcacgaagtcgaaggcggcgcgccgatcaaggcgtggactcgc
ggcgttccggttgacgacaaggcgcgcgcccagctcgcccgggcggcgcaaatgcccttc
atcttcaagcacgtcgcggccatgccggacgtgcatgtcgggatcggggcgaccgtcgga
tcggtgatccccaccaagggcgccgtgatccccgccgccgtcggtgtcgacatcggctgc
gggatgatggccgcgcgcacctcgcttatggcgagcgacctgccggacaacctcgaaggt
atccgctcggcgatcgagcgcgcggtgccgcatgggcgctcctcggggcgcggtggacgt
gacaagggtgcctggggcgatccgccgtccgaggtgatcgaagcctgggcaacgctggtg
cgccggttcgaccgcatcgtggcgaaatatccgcggctcgaacgcaccaaccatctggtg
catttgggcacgctcgggacgggcaaccacttcatcgaactgtgcctcgacgaggcgcaa
gctgtgtgggtgatgctccattccggcagccgcggggtggggaacgccatcgggacgttc
ttcatcgagcttgccaagcaggacatgcgcaagtggcacatcaacctgcccgacgcggac
ctcgcctacttcccggaagggaccgaccacttcgacgactatgttgaggcggtcgagtgg
gcgcaagacttcgcgcggctgaaccgccaggtgatgatgacccacgtcatagccgccctg
cggtcgcagatcgccaagcccttcgaggcggcgtgcgaggcggtgaactgccaccacaac
tacgtgacgcgcgagaaccacttcggagagaacgtgctcgttacccgcaaaggggcggtg
cgtgcggccaagggcacgctggggatcatcccgggctcgatgggggcgaaaagcttcatc
gtgcgcgggctgggcaaccccgacagcttcgacagctgctcgcacggggcgggacgcatc
atgtcgcgcaccgaagccaagaagctggtcacgctcgacgagcacatcgccgacacggcg
ggcatcgcctgccgcaaggacgaaggcgtgatcgacgaaacaccgcgcgcctacaagccg
atcgagaaagtgatggccgcacaggccgatctggtcgaaatcgtgcatatgctgaagcag
gtggtgtgcgtgaaggggtga
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