Erythrobacter neustonensis: A9D12_12245
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Entry
A9D12_12245 CDS
T04416
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pns
Erythrobacter neustonensis
Pathway
pns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9D12_12245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pns03019
]
A9D12_12245
03016 Transfer RNA biogenesis [BR:
pns03016
]
A9D12_12245
Enzymes [BR:
pns01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9D12_12245
Messenger RNA biogenesis [BR:
pns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9D12_12245
Transfer RNA biogenesis [BR:
pns03016
]
Prokaryotic type
tRNA degradation factors
A9D12_12245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
ANK13582
UniProt:
A0A192D6T8
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All DBs
Position
2636663..2638972
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AA seq
769 aa
AA seq
DB search
MPKPPKLPQGMPTASQVLDFIQSSSIPAGKREIAKAFGLKGQEKIKLKALLRDMAEEGLI
DGSKSAFHRMGGVPKVTTLKIVAIEDGDLIAEPDNWDPEAPGNAPRLIVREPKVARNAKS
AKRPPALKRGDRILARTEETDAGWVAVPMKKLPARTEGLMGVVEIDKTGKAWLAPVDKRV
RQSSPIADIGEAEAGQLVIAERVGRSERAGLKVIEVIGDPLAPKSFSMIAIAKHGIPHIF
PEEVLDEAPVAAKLKLSDKTREDLRHLPIVAIDPADARDHDDAIWAEPDGKGGFNALVAI
ADVSFYVRPGSQLDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMACHMHI
NADGKMSSFRFSRALVRIAHNIAYEDAQKAVDSGNPPEYLANLWAAWKALAAARDARDPL
ELELPERRVVLDAQGKIAEIAIRERLDAHRVVEDFMIAANVAAAKALEAKAAPVVYRIHE
PPSREKLTALRDYLATMGKKLALGQVVTPGLFNRMLKDVTDEAEKALVMEAVLRSQTQAY
YGPANAGHFGLSLGSYAHFTSPIRRYSDLLVHRALVDAFKLEQPAPPGSIPDTSGLSDRD
RASLQQVSDAISQTERRAMEAERDTIDRYVAAWLSGRVGEVFETRITGVQAFGFFATIVG
LGGDGLVPISTLGGEYFRHDEAAQALVGSDSGTTYASGDRLKLKLAEANPLTGALKFVLP
DADTGRIEARGARPDEWRRGANSGPKKAGKFMAGKRGRPGNIRHQGRKK
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacctcccaagcttccccaaggaatgccaaccgcgagccaagtgctcgacttc
atccagtcctcaagcattcctgccggcaagcgcgagatcgccaaggccttcgggttgaaa
gggcaggagaagatcaagctgaaggctctgctccgcgacatggccgaagaaggcctgatc
gacggcagcaaaagcgcctttcaccggatgggcggcgtgcccaaggtgacgaccttgaag
atcgtcgcgatcgaggacggcgacctgattgccgagcccgacaattgggaccccgaagcc
cccggcaacgcgccgcgcctgatcgtgcgcgaaccgaaggttgcccgtaacgccaaatcc
gccaagcggcccccggcgttgaagcgcggcgaccgcattcttgcgcgcaccgaggaaacc
gatgcaggctgggtcgcagtcccgatgaagaaactgcctgcgcgcaccgaggggctgatg
ggcgtggtcgagatcgacaagaccggcaaggcgtggcttgcgccggtcgacaagcgggtg
cgccagtcctcgccgatcgccgatatcggcgaggccgaggccgggcagctggtgatcgcg
gagcgcgtgggccgttcggaacgcgccggcctgaaggtgatcgaggtgatcggcgatccg
ctcgcccccaagagcttcagcatgatcgcgattgccaagcacggtattccgcacatcttc
cccgaggaagtgctcgacgaagccccggtcgcggcaaagctgaaactgtcggacaagacg
cgcgaggacctgcgccacttgccgatcgtcgcgatcgaccccgccgatgcgcgcgaccac
gatgacgcgatctgggccgagcccgacgggaagggcgggttcaacgcgctggtcgcgatt
gccgatgtgtccttctacgtccgccccggcagccagctcgaccgcgaggcgaggaagcgc
ggcaattcggtctatttccccgaccgcgtggtgccgatgctgcccgaggtgctctcggcc
gatgtctgctcgctgaaggaaggcgaggaccgcgcggcgatggcctgccacatgcacatc
aacgccgatggcaagatgtcgagcttccgcttttctcgcgcgctggtgcggattgcgcac
aacatcgcctatgaagacgcgcaaaaggcggtcgatagcggcaatccgcccgaatatctc
gccaatctgtgggccgcgtggaaggcgctcgccgctgcacgcgatgcgcgcgatccgctt
gagctggagctgcccgaacgccgcgtggtgctcgatgcacaaggcaagattgccgaaatc
gcgatccgcgagcggctcgacgcgcaccgcgtggtcgaggatttcatgatcgcggccaac
gtcgcagcggccaaggcgctcgaagccaaggccgcgcctgtggtctatcgcatccacgag
ccgccgagccgcgagaagctgacggctttacgcgattacctcgccacgatgggcaagaag
ctggcgctggggcaggtggtgacgccgggcctgttcaaccggatgctcaaggatgtcacc
gacgaggcggaaaaggcgctggtaatggaggcggtgctgcgcagccagacgcaggcttat
tacgggccggccaacgcaggccacttcggcctcagtctgggatcatacgcgcatttcacc
tcgccgatccggcgctattccgatctgctggtgcaccgcgcgctggtcgatgccttcaag
ctcgagcagcccgcgccgccgggatcgatccccgacaccagcggattgtccgaccgcgac
cgggcaagcctgcaacaggtcagcgacgcgatcagccagaccgagcgccgtgcgatggaa
gccgagcgcgacaccatcgaccgctatgtcgcggcctggctttctggccgcgtgggcgag
gtgttcgaaacgcggattaccggcgtgcaggcgttcgggttcttcgccacgatcgtcggg
ctgggcggcgacgggctggtgccgatctcgacgctgggcggcgaatatttccgccacgac
gaggcagcacaggcgctggtcggcagcgacagcggcaccacctatgccagcggcgaccgg
ttgaagttgaaactggccgaagccaacccgcttaccggtgcattgaagttcgtgctgccc
gatgccgatacgggccggatcgaagcccgcggcgcgcggcccgatgaatggcggcgcggt
gctaattcagggccgaagaaggcgggcaagttcatggcgggcaagcgcgggcgtccgggc
aatatccggcatcaggggcgcaagaagtag
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