KEGG   Pseudomonas nitroreducens: G5B91_02770
Entry
G5B91_02770       CDS       T08828                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pnt  Pseudomonas nitroreducens
Pathway
pnt02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pnt00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    G5B91_02770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pnt03021]
    G5B91_02770
Transcription machinery [BR:pnt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     G5B91_02770
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF PhyR_sigma-like Rv2175c_wHTH MerR HTH_17 HTH_24 HTH_29 Sigma70_r3 HTH_11
Other DBs
NCBI-ProteinID: QIE85249
LinkDB
Position
complement(571185..571703)
AA seq 172 aa
MSAIQMGSGELVGALYRAHRDWLTAWLNRSLGCPQRAEDLSQDTFVRVLGRRELPSLREP
RAFLVTVAKGLLVDHWRRVALEQAYLEELKFLPEAVQPSAEEHCLILADLREIDRLLGKL
STRARSAFLLNRLDGLGHAEIAEQLGVSVPRVRQYIAQGLRQCYIALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgtcggccatccagatgggtagcggcgaactcgttggcgccttgtatcgcgctcaccgc
gactggctgactgcctggctgaaccgcagcctgggctgtccgcagcgcgccgaagacctg
agccaggacaccttcgtccgcgtgctcggccgtcgcgagctgccttccctgcgcgaaccg
cgcgccttcctggtcaccgtcgccaagggcctgctggtggatcactggcgccgcgtggcg
ctggagcaggcctacctggaagaactgaagttcctgcccgaagccgtgcagccgtcggcc
gaggaacactgcctgatcctcgccgacctgcgcgagatcgaccgtctgctgggcaagctg
tccacccgcgcgcgcagcgccttcctgctcaaccgcctggatggcctgggccacgccgag
atcgccgagcagttgggcgtttccgtgccgcgggtacgccagtacatcgcccagggcctg
cgccagtgctacatcgccctgtacggcgagccgacgtga

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