Pseudomonas nitroreducens: G5B91_03425
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Entry
G5B91_03425 CDS
T08828
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pnt
Pseudomonas nitroreducens
Pathway
pnt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5B91_03425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnt03021
]
G5B91_03425 (rpoB)
03400 DNA repair and recombination proteins [BR:
pnt03400
]
G5B91_03425 (rpoB)
Enzymes [BR:
pnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5B91_03425 (rpoB)
Transcription machinery [BR:
pnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5B91_03425 (rpoB)
DNA repair and recombination proteins [BR:
pnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5B91_03425 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
QIE85365
UniProt:
A0A6G6IQF1
LinkDB
All DBs
Position
702163..706236
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQVRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALNYSTEEILNAFYDTNVYQIKGET
LNLELVPSRLRGEIASFDIKDASGKVIVEAGRRITARHINQLEKAGITQLEVPFDYLIGR
TVAKAVVHPATGEIIAECNTELTVDALAKIAKAQVARLETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GAGVLSKEDIVEVLKTLVAIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
EGLVSDDIVFLSAIEEADHVIAQASATLNEKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVQKGD
QVSRSDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGAKADGGPALKKGAEITDEYLDGLERGQWFKLRMA
EDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRVFLNEIYNEIGGRQESLDELNDNEILALANNLKGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLYDGRTGNQFERTTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gccggtgcgagcaaggaccaggttcgagacatcggcctgcatgcggccttcaagtccgtc
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggctaccgcctcggt
gagccggcattcgatgtcaaggaatgcgtgctgcgcggtgtgaccttcgcggtcccgctg
cgtgtgaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaggaacaagaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtttcccagctgcaccgttccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgctcgtatc
attccttaccgcggttcgtggctcgacttcgagttcgatccgaaggactgcgtgttcgtt
cgtatcgaccgtcgccgcaaactgccggcttccgtcctgctgcgcgcgctgaactacagc
accgaggaaatcctcaacgcgttctatgacaccaacgtctaccagatcaagggcgagacc
ctgaacctggaattggtgccgtcgcgtctgcgtggcgagatcgccagcttcgacatcaag
gatgccagcggcaaggtcatcgtcgaggcgggccgtcgtatcactgcgcgccacatcaac
cagctcgagaaggctggtatcacccagctggaagtgccgttcgactacttgattggccgt
accgtggccaaggctgtcgtgcacccggctaccggcgagatcatcgccgagtgcaacacc
gagctgaccgtcgatgccctggccaagattgccaaggcccaggttgcgcgcctggaaact
ctgtacaccaacgatatcgactgtggtccgttcatctccgacacgctgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcccggtgagccg
ccgaccaaggaagccgccgaaaccctgttcggcaacctgttcttcagcgccgagcgttac
gacctttcggcagtcggccgtatgaagttcaaccgccgcatcggtcgtaccgagatcgaa
ggcgcgggtgtcctcagcaaggaagatatcgtcgaggtcctcaagaccctggttgccatc
cgtaacggtaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgttcgttgc
gtcggcgaaatggccgagaaccagttccgcgttggcctggtgcgtgtcgagcgcgcggtc
aaggaacgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgccgcgatcaaggagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcactcacaaacgccgtgtctccgcactcggcccg
ggtggtctgacccgtgagcgcgcgggcttcgaggttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gccacctacgctcgcaccaacaagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggtctggtcagcgacgacatcgtcttcctttccgcgatcgaagaggccgatcatgtg
atcgcccaggcctcggcgaccctgaacgaaaagggtcagttgatcgacgaactggtagcc
gtccgtcacctgaacgaattcaccgtgaaggcgccggaagacgtcaccctcatggacgta
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtcggtaccggcatggagcgcaacgttgcccgtgactccggcgtctgc
gtggtggctcgtcgtggcggcgtgatcgactcggtcgacgccagccgtatcgtggtccgc
gtgaacgacgatgaagtcgagactggcgaagccggcgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgcagaagggtgat
caggtttcgcgcagcgacatcctggccgacggtccgtccaccgatatgggtgaactggct
ctgggtcagaacatgcgcgttgcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaagatcgtttcaccacgatccacatccaggaa
ctgacctgcgttgcccgtgacaccaagctcggcccagaggaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaataagctggacgaagcaggcatcgtctacgtcggcgcc
gaagtacaggccggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgtgtgccgaccggtaccaagggcaccgtcatcgacgtacaggtcttcacc
cgtgatggcgtggagcgcgacagccgtgccctgtccatcgagaagatgcagctggacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgttccgctctggtcggtgccaaggccgatggcggtcctgccctgaagaaaggcgcagag
atcaccgacgagtacctggacggcctcgagcgcggccagtggttcaagctgcgcatggcg
gaagacgctctgaacgagcagctggagaaggcccaggcctacatcagcgaccgtcgccag
atgctcgacgacaagttcgaagacaagaagcgcaagctgcagcagggcgacgacctggcg
ccgggcgtactgaagatcgtcaaggtctacctcgccatcaagcgccgcatccagccgggc
gacaagatggcgggccgccacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgatgccaacggtactccggtggatatcgttctgaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctgggtctcgcggccaagggc
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgagttgcgtgtc
ttcctgaacgagatctacaacgagatcggtggccgccaggagagcctggacgagctgaac
gataacgagatcctcgctctggccaacaacctcaagggcggcgtgcccatggctaccccg
gtgttcgacggtgccaaggagcgcgagatcaaggccatgctgaagctggccgatctgccg
gagagcggtcagatgcgtctgtatgacggccgcaccggcaaccagttcgagcgtacgacc
actgtgggttacatgtacatgctcaagctgaaccacctggtcgatgacaagatgcacgca
cgttccaccggctcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaggtctgggcgctggaagcctacggtgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggacggggatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgctcgctcggcatcgatatcgaactggaaaccgaataa
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integrated database retrieval system
