Pseudomonas nitroreducens: G5B91_21370
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Entry
G5B91_21370 CDS
T08828
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnt
Pseudomonas nitroreducens
Pathway
pnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B91_21370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnt03019
]
G5B91_21370
03009 Ribosome biogenesis [BR:
pnt03009
]
G5B91_21370
Enzymes [BR:
pnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5B91_21370
Messenger RNA biogenesis [BR:
pnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5B91_21370
Ribosome biogenesis [BR:
pnt03009
]
Prokaryotic type
rRNA helicases
G5B91_21370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QIE88683
UniProt:
A0A6G6J0G7
LinkDB
All DBs
Position
complement(4487721..4489421)
Genome browser
AA seq
566 aa
AA seq
DB search
MTQETAGFAALGLHPNVLAAIAAVGYEEPSPIQAQSIPVILEGHDMIGQAQTGTGKTAAF
ALPLLSQIEPSRRVPQVLVLVPTRELALQVATAFETYSKQMPGVGVIAVYGGAPMGPQLK
ALRQGAQVVVATPGRLCDHLRRDENLLSTVKSLVLDEADEMLKLGFMDDLEVIFEAMPSS
RQSVLFSATLPASIRSIAERHLKEPKHVRIAAKTQTVARIEQVHLMVHADQKPASILRLL
EVEQFDALIGFVRTKQATLDIAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVI
ATDVAARGLDVARITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVGEVRLPDAETVLEARLNRLATGLQPLLANAVANRGAVRDELCRRLGTDMDTL
AAVLLAKLTEGKALDLESVRREQPLTPAAPRERSGDRYERSERGDRPERGDRPERSGERR
TMAPPSEGKARCRTALGARDGVQAKNLLGAILNEGGLSREAIGRIQIRETFSLIELPEEN
LERLLTKLKDTRVAGKALRLRRYRED
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccgccggcttcgccgcgctcggtcttcaccccaatgttctcgctgcc
attgccgctgtcggttatgaagagccgtcgccgatccaggcccagtcgatcccggtgatc
ctcgaaggccacgacatgatcggccaggcccagaccggtaccggcaagactgccgcgttc
gcgctgccgttgctttcgcagatcgaacccagccgccgtgtcccgcaggtgctggtgctg
gttccgacccgcgaactggccctgcaggttgccaccgctttcgagacctactccaagcag
atgccgggcgtcggcgtcattgccgtctacggtggtgcccccatgggcccgcagctcaag
gccctgcgccagggcgcccaggtcgtggtcgccaccccgggccgcctgtgcgaccacctg
cgccgcgacgaaaatctgctctccaccgtcaagagcctggtcctcgacgaagcggacgaa
atgctcaagctcggcttcatggatgacctcgaagtgatcttcgaagccatgccgtccagt
cgtcagagcgtgctgttctccgcgaccctgccggcctcgatccgcagcatcgccgaacgc
cacctgaaagaacccaagcacgtccgcatcgccgccaagacccagaccgtcgcccgcatc
gagcaggtgcacctgatggtccacgccgaccagaagccggcgtcgatcctgcgcctgctg
gaagtcgaacagttcgacgcgctgatcggcttcgtccgcaccaagcaggccaccctggat
atcgccgagctgctcgagcgccagggctaccgtgccgccgcgctgaacggcgatatgccg
caggcgcagcgtgagcgcgtgatcgagtccctgaaggatggctcgctggacatcgtcatc
gccaccgacgttgccgctcgcggcctggacgtggcgcgcatcacccacgtactcaacgtg
gacatgccctacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgctggc
cgcgaaggtcgcgccctgctgctggtgaccccgcgcgaacgccgcatgctgcaggtgatc
gagcgtgtgaccgggcagaaggtcggcgaagttcgcctgccggacgccgagaccgtgctg
gaagcccgcctgaatcgcctggccaccggcctgcaaccgctgctggccaacgccgtggcc
aaccgtggcgccgtgcgcgacgagctgtgccgtcgcctgggtaccgacatggataccctg
gccgccgtgctgctggccaagctcaccgaaggcaaggcgttggacctggaatcggtccgc
cgcgaacaaccgctgaccccggcggctccgcgcgagcgcagcggtgaccgttacgagcgc
agcgaacgtggcgatcgccccgagcgcggcgaccgtccggagcgcagtggcgagcgtcgc
accatggctccgccgtcggaaggcaaggcccgctgccgtactgccctgggcgcccgtgat
ggcgtgcaggcgaagaacctgctgggcgccatcctcaacgagggcggcctgtcccgcgag
gccatcggccgcatccagatccgcgagaccttcagcctgatcgagctgccggaagagaac
ctcgagcgtctgctgaccaagctcaaggacacccgtgtcgccggcaaggccctgcgcctg
cgtcgttatcgcgaagactga
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