Pseudomonas nitroreducens: G5B91_21860
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Entry
G5B91_21860 CDS
T08828
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pnt
Pseudomonas nitroreducens
Pathway
pnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B91_21860 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnt03019
]
G5B91_21860 (rne)
03009 Ribosome biogenesis [BR:
pnt03009
]
G5B91_21860 (rne)
Enzymes [BR:
pnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G5B91_21860 (rne)
Messenger RNA biogenesis [BR:
pnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G5B91_21860 (rne)
Ribosome biogenesis [BR:
pnt03009
]
Prokaryotic type
rRNA processing factors
G5B91_21860 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QIE88774
UniProt:
A0A6G6J0L0
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All DBs
Position
4586805..4589966
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AA seq
1053 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFKKNPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEELQW
DLDYLLQLWGAIKEASGERSGPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALN
FIQQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDNPELLSGHASYEMAPEEHEEVQPVSATRTLVRQEAAVKTVSPQTPAPQQTAA
AAPVVEATKPMPEPSLFQGLVKSLVGLFAGSKPEPTPVAAEKPATERSEGQGERRNGRQQ
NRRRDGRDGGRRDDERKERGRREERGERAERPAREERQPREERAERQPREERQPREERAE
RQPREERQPREERAERQPREERTERQPREERQPREDRAERQPREERQPREERQPRGERAE
RQPREERQPREDRQARDAAALEAEELPNEELLEQQDDEGSDDERPRRRSRGQRRRSNRRE
RQREAGVDGVEGEATGAEGTAEQAASDTPSPAAMVAAAATAVAVAEAAGEQEQPAVEAQV
ETVAVESGVVEAVRTESALEQTIEFLAKPAEQAAEPVEAAHETVEVVATEPTIAEEAPTP
AAEAVIEAVAQLVEEPKAEAPAAAEEAPAAAPAPAEEAASAVPANATGRASNDPRERRRQ
ERLAREAAAAAAAALQVEQAPVVEAVIEEAAVVEAEVAAEPAADITAETVVAEAVSEAEA
QSVEQAEPAAEQVEGDKAEKTEEEGTVVEKHHS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcgactcaacccgaagagttgcgtgtagcgctggtagac
ggccaacgcctgttcgacctggacatcgagtccggcgcgcgcgaacagaagaaggccaac
atctacaaaggccgcattacccgcatcgagccgagcctcgaggctgcattcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaag
aaccccgaaggccgcatcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgtggcaacaagggcgccgccctgaccaccttcatcagcctc
gccggccgctacctggtgctcatgcccaacaacccgcgcgctggcggcatctcccgccgc
atcgagggtgaagagcgcaacgaactgcgcgaagccctgaacggcctcaccgttcccggc
gacatgggtctgatcgtccgcaccgcgggcctgggccgcagttccgaagagctgcaatgg
gacctggactacctgctgcaactgtggggcgccatcaaggaagcctccggcgagcgcagc
ggcccgttcctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaac
ttcatccagcaggtcatgccgcagtacgcgagcaaggtgaagctgtaccaggacagcgtc
ccgctgttcaatcgcttccagatcgagagccagatcgaaaccgccttccagcgcgaagtg
aagctgccgtcgggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccaactgcgtctgcgtgatatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagaacgcgtc
cgcgaagccctggaagccgaccgtgcccgcgtccaggtcggccgtatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccgtccctgggcgagaccagcggcatcgtc
tgcccgcgttgcaacggccagggcatcatccgcgacgtcgagtccctgtcgctggccatc
ctgcgcctgatcgaggaagaagccctgaaggaccgcaccgccgaagttcgtgcgcgcgtg
ccgttccaggttgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgag
ctgcgtacccgtgcacgcatcttcatcctgccggacgaccacctggaaactccgcacttc
gaagtccagcgcctgcgcgacgacaaccccgagctgctgtccggccacgccagctacgag
atggccccggaagagcacgaggaagtccagccggtcagcgccacccgcaccctggttcgc
caggaagccgcggtgaagaccgtttccccgcagacccctgccccgcagcagaccgctgcc
gcagcgccggttgtcgaagccaccaaacccatgcctgagccgagcctgttccagggcctg
gtgaagtcgctggtaggcctgttcgccggcagcaagccggagccgaccccggtggccgcc
gagaaaccggccaccgagcgcagcgaaggccagggcgaacgtcgcaacggtcgccagcag
aaccgtcgccgcgacggtcgtgacggcggtcgccgtgacgacgagcgcaaagaacgcggt
cgtcgcgaagagcgcggcgagcgcgccgaacgcccggcccgcgaagagcgccagccgcgc
gaagagcgtgcagaacgtcagccccgcgaagagcgtcaaccgcgcgaagagcgtgcagaa
cgtcagccccgcgaggagcgccagccgcgtgaagagcgcgccgaacgtcagccgcgcgaa
gaacgcaccgagcgtcagccccgcgaagaacgccagccgcgtgaagatcgcgccgagcgt
caaccgcgcgaggaacgccagccgcgcgaagagcgccagcctcgtggcgagcgcgccgag
cgtcagccccgtgaagagcgtcaaccgcgtgaagaccgtcaggctcgcgatgctgccgcc
cttgaggccgaagagctgccgaacgaggagctgctggagcaacaggacgacgaaggttcg
gatgacgagcgtccgcgtcgccgctcccgcggccagcgccgccgcagcaaccgccgcgag
cgccagcgtgaagccggcgtggatggtgttgaaggtgaagcgactggcgccgaaggcacc
gccgagcaggctgcttccgacactccgtcgcccgccgccatggtcgctgccgctgctacc
gccgttgccgtagccgaagctgctggcgagcaggagcaaccggctgtcgaagcccaggtc
gagaccgttgcggtcgagtccggcgtcgtcgaggccgttcgcaccgagagcgccctggag
cagaccatcgagttcctggccaagcccgccgaacaggctgccgagccggtcgaagccgcc
cacgaaaccgttgaagtggtggctaccgagcctaccattgcggaagaagcgccgaccccg
gctgctgaagccgtgatcgaagccgtcgcccaactggtcgaagagcccaaggcagaagcg
ccggccgctgccgaagaagccccggcagctgctccggcgcccgccgaagaagccgcctcg
gccgttccggccaacgctaccggccgagcctccaatgacccgcgcgagcgccgtcgtcag
gagcgcctggcccgcgaagccgccgctgctgcagctgctgccctgcaggtcgagcaggct
ccggttgtcgaagcggtgatcgaggaagctgccgtcgtcgaagctgaagtcgcggccgaa
ccggctgccgacatcacagcagagaccgttgtggccgaagcggtgagtgaagccgaagcc
caatccgtggagcaggccgaaccggctgccgaacaggttgaaggcgacaaagccgagaag
accgaggaagaaggcaccgtagttgagaaacaccacagctga
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