Pseudomonas nitroreducens: G5B91_24975
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Entry
G5B91_24975 CDS
T08828
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pnt
Pseudomonas nitroreducens
Brite
KEGG Orthology (KO) [BR:
pnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnt03019
]
G5B91_24975 (hrpA)
Enzymes [BR:
pnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G5B91_24975 (hrpA)
Messenger RNA biogenesis [BR:
pnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5B91_24975 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
ABC_tran
AAA_25
AAA_23
Zeta_toxin
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
QIE89336
UniProt:
A0A6G6J1L7
LinkDB
All DBs
Position
complement(5217203..5221222)
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AA seq
1339 aa
AA seq
DB search
MTPETTPTPEQLLQRMDHALIRDRHRLRRQLHELRKHPDDAKLAQWAERFQASCAKVEAR
RASIPKIRYDDSLPIAAKRDEIQAALEKSQVVVIAGETGSGKTTQLPKICLELGRGTHGL
IGHTQPRRLAARSVATRVAEEIGTPLGSLVGYQVRFEDQSDDSTLIKLMTDGILLAETQH
DRYLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKLIITSATIDLERFSKHFGDA
PIVEVSGRTYPVDTWYRPLAAEMDEDGEALFDDLSVDQGILRALDEIAAHEREIGKRPGD
VLVFLPGEREIRDAADMLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAE
TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLY
SEEDFNGRPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAINDGFTLLQEL
SAVNREGQLTPLGRQLARLPIDPRLGRMLLEAAQLGSLPEVLTVASALSVQDPRERPMDR
QQAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNPLRNWCRKNFLNYLRLREWRDA
HRQLTLICRELQLPFGSKSDGAQRKNEPVREQAKPHDNRGRQPVAKADEPKARDIDYAAV
HKAILSGLLSQIGQKAEEGDYLGARQRRFWIHPSSVIGRKKPQWIMAAELVETTKLFARM
VAKIEPDWLEPLAGHLVKKNYLEPHWEKRRGQVVAYEQVTLYGLIIIGRRAVHYGPIDAP
VSREMFIREALVRGEINSRAKCLSANRQLLEKLDELEAKARRRDILADEETLFAYYDERL
PADIYQSASFEKWYEREHKAKPDLLIMREEDVLARDASEVTAGLYPDRLQLGELQLPLTY
HFEPGHVRDGVTLRVPAPLLPQLPAERLEWLVPGLLEAKCIELVRCLPKAIRKNFVPVPD
FVRAALGKMVFAEGALSESLGRELQRMTGSRVPEEAWAEAETQVESHLRMNIEVVDARGK
FLGEGRDLAELTARFAEASQAALAIPQADKPQKPVEAKGFAGVAEKVQQKVAGLSMTVYP
ALVEEAGVVKENRFPTQAEADYQHRRALQRLLLQQLAEPAKFLRSKLPGQTDMGLLYREL
GRVESLVEDILLASLDSAILDGEANLPRDGAGLASLAEKKRGAWTEHAERIARLTLEILK
LWHGLQKRFKGKVDLAMTVPLNDVKGQLARLVYPGFVRDTPLEWLKEIPRYLKAVEQRLD
KVAGQVQRDRVWSGEMAGYWEQYSARLAKHAQEGKRDPELVLYRWMLEEYRVSLFAQQLG
TKIPVSDKRLSKQWSQIEA
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgaccccagaaaccacgccgactcccgaacagctcctgcagcgcatggaccatgcgctg
atccgcgaccgccatcgcctgcgccggcagctccacgaactgcgcaagcacccggacgac
gccaagcttgcccagtgggccgagcgtttccaggcctcctgtgccaaggtcgaggcgcgc
cgtgcgagcattccgaagattcgctacgacgacagcctgcccatcgccgccaagcgcgac
gagatccaggccgcgctggaaaagagccaggtggtggtgatcgccggcgaaaccggttcg
ggcaagaccacccagctgccgaagatctgcctggagctgggccgtggcacccatggcctg
atcggccacacccagccgcgccgcctggccgcgcgcagtgtcgcgacccgcgtcgccgag
gaaatcggcacgccactgggctcgctggtcggctaccaggtgcgtttcgaggaccagagc
gacgacagcacgctgatcaagctgatgaccgacggcattctgctggccgagacccagcac
gaccgctacctggagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctg
aacatcgacttcctgctcggcttcctgaagacgctgctgccgcgccgtcccgacctgaag
ctgatcatcacctcggcgaccatcgacctggagcgtttctccaaacacttcggtgatgcg
cccatcgtcgaagtctctggccgtacctatccggtggacacctggtaccgcccgctcgcc
gcggagatggatgaggacggcgaggcgctgttcgacgacctgtccgtggatcagggcatc
ctccgcgcgctggacgaaattgccgcccatgagcgcgaaatcggcaagcgccccggcgac
gtgctggtgttcctccccggcgagcgcgagattcgcgatgccgccgacatgctgcgcaag
gccaacctgcgccacaccgaagtgttgccgctgtatgcgcgcctgacgccggccgagcag
cagaagattttcgcgcccatgccggggcgcaagatcgtgctcgccaccaacgtcgccgag
acctcgctgaccgtgccgggcatccgctacgtgatcgacagcggcacggcgcgcatcagc
cgctacagctaccgcgccaaggtccagcgcctgcccatcgaagccgtctcgcaagccagc
gccaaccagcgcaagggccgttgcggccgggtcgagccgggcatctgcgtgcgcctgtac
agcgaggaagacttcaacggtcgcccggccttcaccgatccggaaatcctgcgcaccaac
ctggcggcggtgatcctgcagatgctccatctgcgactgggcgacatcgaggccttcccc
ttcatcgagccgccggatggcaaggcgatcaacgacggcttcaccctgctgcaggagctc
tcggcagtaaaccgcgagggccagctcacaccgctgggccgccagctcgcgcgcctgccc
atcgacccgcgcctgggccgcatgctgctggaggccgcacaactgggcagcctgccggaa
gtcctcaccgtggccagcgcgctgtcggtgcaggacccgcgcgagcggccgatggatcgc
cagcaggccgccgaccaggcccacgcacagtggaaggacccggactcggacttcgccgcc
ctgatcaacctctggcgcggcttcgaggagcagcgccaggcgctgggctccaacccgctg
cgcaactggtgccggaagaacttcctgaactacctgcgcctgcgcgagtggcgcgatgcg
caccgccagctgacgttgatctgccgcgaattgcagctgcctttcggctcgaagtcggac
ggcgcccagcgcaagaacgaacccgtccgcgagcaggccaagccgcacgacaaccgtggc
cgccagccggtcgccaaggcggatgagccgaaggcccgcgacatcgactacgccgccgtg
cacaaggcgatcctctccggcctgctcagccagatcggccagaaggcggaggagggcgac
tacctcggcgcgcgccagcggcgcttctggattcatccctccagcgtcatcggccgcaag
aagccgcagtggatcatggccgccgagctggtggagaccaccaagctgttcgcccgcatg
gtcgccaagatcgagccggactggctggaaccgctggccgggcacctggtgaagaagaac
tacctggaaccgcactgggagaaacgccgcggccaggtagtggcctacgagcaggtcacc
ctgtatggcctgatcatcatcggccgccgcgccgtgcactacggcccgatcgatgcgccg
gtgtcccgcgagatgttcatccgcgaggcgctggtgcgcggcgagatcaacagccgcgcc
aagtgcctgtcggccaaccgccagttgctggagaagctcgacgagctggaagccaaggcg
cgccggcgcgacatcctcgccgacgaggaaaccctgttcgcctactacgacgaacgattg
ccggcggatatctaccagtctgccagcttcgagaaatggtacgagcgcgagcacaaggca
aaaccggacctgctgatcatgcgcgaggaagatgtcctcgcccgcgatgccagtgaagtc
actgccggtctttacccggatcgcctgcaactgggtgagttgcagttgccgctcacctac
catttcgaaccgggccacgtgcgggacggcgtgaccctgcgcgtgccggcgccactgttg
ccgcaactgcctgccgaacgcctcgaatggctggtgccgggcctgctggaagccaagtgc
atcgagctggtgcgctgcctgcccaaggccatccgcaagaacttcgtgccggtgccggac
ttcgtccgggcggcgctgggcaagatggtcttcgccgagggcgcgctgtccgaatccctc
ggccgcgagctgcagcgcatgaccggcagccgtgtgccggaagaggcctgggcggaagcc
gagacccaggtggaaagccacctgcggatgaacatcgaagtggtcgacgcccgtggcaag
ttccttggcgaaggtcgtgatctggcggaactcaccgcgcgcttcgccgaggccagccag
gccgcgttggcgatcccgcaggccgacaagccgcagaaaccggtggaagccaagggcttc
gccggggtcgcggaaaaggtccagcagaaggtcgccgggctgtcgatgacggtctatccg
gcgctggtggaggaggccggcgtggtcaaggaaaaccgcttcccgacccaggccgaggcc
gactaccagcaccgccgcgccctgcaacgcctgctcctgcaacagctcgccgagccggcc
aagttcctgcgcagcaagctgccggggcagaccgacatgggtctgctctatcgcgagctg
ggccgggtcgagtcgctggtggaagacatcctgctggccagcctggacagcgccattctc
gacggtgaagccaacctgccgcgcgatggcgccgggctcgcgtcactggccgagaagaag
cgcggcgcctggaccgagcacgccgagcgtatcgcccgcctgaccctggaaatcctcaag
ctctggcatggcttgcagaagcgcttcaagggcaaggtcgacctggccatgacggtgccg
ctcaacgatgtgaaggggcaactggccaggctggtctaccccggcttcgtgcgtgacacg
ccgctggaatggctgaaggaaatcccgcgctatctgaaggctgtggaacagcgtctggac
aaggtcgccggtcaggtccagcgcgaccgcgtgtggagcggtgagatggccggctactgg
gaacagtactcggcgcgcctggccaagcacgcccaggaaggcaagcgcgacccggagctg
gtgctctatcgctggatgctggaggaataccgcgtttcgctgttcgcccagcaactgggg
acgaagattccggtgtcggacaagcgcttgtcgaagcagtggagccagatcgaggcctga
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integrated database retrieval system
