Pseudomonas nitroreducens: G5B91_30080
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Entry
G5B91_30080 CDS
T08828
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnt
Pseudomonas nitroreducens
Pathway
pnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B91_30080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnt03019
]
G5B91_30080
Enzymes [BR:
pnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5B91_30080
Messenger RNA biogenesis [BR:
pnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5B91_30080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIE90272
UniProt:
A0A6G6J4T1
LinkDB
All DBs
Position
6314627..6316657
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AA seq
676 aa
AA seq
DB search
MSFTSLGLSEALAGAVEAAGYARPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGMN
PQVQAMSKGVDVLVACPGRLLDLIGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDIIDLTNKLLHNPERIEVTPPNTTVERIEQRVFRIPSVQKRALL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLSKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRTGEAISLVAPDEDKL
LKAIERLTKQRIPDGDMQGFDPDTVLPEVQQPEAREVPQRQPRKDKAKRGERKDRSKDKP
QQPQGEGQQNAAPAAEGEFADSDKPAGKRRRRGGRGKKKGDGQGSDAQPNAHTQAREPRQ
PRQQDQQGQGRQQQPKQVRAPKVDGNRDPEEFLDDDFDNFGNRADYVSPFPDKDQQRSQR
RRGGQGQGQNQGQGQQRPRGQGAGQGGSGQNRGQGQGQGRAAKKPNGGGRTQGQGGNAQG
KAGQRKRGGKAPASRMNDAPLREPSEYGAAKPTRQPVVINKRDLVRTDRFPTPEQLEELE
PRRKTERPALLTRNRD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttacttccctcggtctctccgaggccctggctggcgccgttgaagccgccggc
tacgcgcgccccactcccgttcaggaacgcgccatccccgccgtactgcaaggccgcgac
ctcatggttgccgcacagaccggcaccggcaagaccggcggcttcgccctcccggtgctc
gaacgcctgttccccgaaggtcacccggaccgcgaacaccgccatggcccacgccaggcc
cgtgtcctggtactgactccgacccgcgagctggcagcccaggtgcacgacagcttcaag
gtctacgcccgcgacctgccgctgaaaagcgcctgcatcttcggcggcgtcggcatgaat
ccccaggtgcaggcgatgtccaagggcgtcgacgtcctggtcgcctgccccggccgcctg
ctcgacctgatcggtcagggcagcgtcgacctgtcccatgtggaaatcctcgtcctcgac
gaagccgaccgaatgctcgacatgggcttcatccatgacgtgaaaaaggtcctcgccaag
ctgccggccaagcgccagaacctgctgttctcggcgaccttctccaaagacatcatcgac
ctcaccaacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgagcgcatcgaacaacgcgtgttccgcatcccgtcggtgcagaagcgcgccctgctg
gcgcacttggtgaccgtgggtgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctcgccgaatacctgagcaagcatggcctgccggctgccgcgatccac
ggcaacaagagccagaatgcgcgcaccaaggccctggctgatttcaaggccaacgacgtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccaactgcctcac
gtggtcaactacgagctgcccaacgtcgaggaagactacgttcaccgcatcggccgtacc
ggccgtgccggtcgcaccggtgaagccatctcgctggtggcgccggacgaagacaaactg
ctcaaggccatcgaacgcctgaccaagcagcgcatccccgatggcgacatgcagggcttc
gaccccgataccgtgctgcccgaggtccagcagcccgaggcccgcgaagtacctcagcgc
cagccgcgcaaggacaaggccaagcgtggcgaacgcaaagaccgcagcaaggacaagcct
cagcagccccagggtgagggccagcagaacgctgcccccgcagctgaaggcgaattcgcc
gacagcgacaagccagccggcaagcgccgtcgtcgtggcggccgtggcaagaagaagggt
gacggccagggcagcgacgctcagccgaacgcccacacccaggctcgtgagcctcgccag
ccccggcagcaggaccagcagggtcagggccgccagcagcagcccaagcaggtccgagca
ccgaaggtcgacggtaaccgcgatcctgaagagttcctcgacgacgacttcgacaacttt
ggcaaccgcgccgactacgtcagcccgttcccggacaaggaccagcagcgcagccagcgc
cgccgtggcggccaggggcaaggccagaaccaggggcagggccagcagcgcccgcgtggc
cagggtgccggccagggcggaagcggtcagaaccgtggccaggggcaaggccagggccgc
gccgccaagaagcctaacggcggcggtcgcacccagggccagggcggcaacgctcagggc
aaggccggccagcgcaagcgcggcggcaaggctccggcttcgcgcatgaacgacgccccg
ctgcgcgagccgagcgagtacggcgccgccaagccgacccgccaaccggtagtgatcaac
aagcgcgacctggtccgcaccgaccgcttcccgacaccggagcagttggaagagctggaa
ccacgccgcaagaccgagcgtcccgccctgctgacccgcaaccgcgactga
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