Polynucleobacter asymbioticus: Pnuc_0215
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Entry
Pnuc_0215 CDS
T00502
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pnu
Polynucleobacter asymbioticus
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnu03016
]
Pnuc_0215
Enzymes [BR:
pnu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pnuc_0215
Transfer RNA biogenesis [BR:
pnu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pnuc_0215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ABP33436
UniProt:
A4SVC2
LinkDB
All DBs
Position
212993..215023
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AA seq
676 aa
AA seq
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MNLLYEEGGDIKIATVQSSTGTGDAESWQATSLSGKKIKIKAKEVWLRFEKPEAQAVMDE
AQVLSKDIDLQLLWDCAPDEEFGLVDVSLEYFGAQASIPQQVALAIALQGAPVFFRRKGR
GRFQRAPLEQLQAGLAALERKQKELEQQAIWQKEMVAGNFPETLRSSAQQLLFSPDKNTF
AYKALIAACTETGESPPQLMIRCGAIDSPLAYHQGMFLKAHFPNGSTHQNIGVDESTYAQ
AIAALPEADVKAFSIDDSGTTEIDDALSVSTLAAGGHRIGIHIAAPGLAIAKDDPLDQVA
RNRMSTVYFPGDKITMLPDVVIEQFSLDEGSARPALSIYVDIDEDGVVQRETLQMRAERV
PMAANLRLEDLEHLVSEETLFDESENYPYRKELGILWQAAKLLHAGRQEKRVANGLRAEQ
LGVIDPNALARDFYFQIQDQDGIQHVEIVPRQRGSILDTIVAEWMIFCNSASGQLLADHG
LPGLFRTQKGWGPLRTRMQTTPGPHEGLGLDYYAWCTSPLRRYSDLVNQWQLIALAKHGV
TAKMVAPFPPRDATLMGIAADFESCYQAYGEYQDRLEKYWCLRWIAQDDDSKGVFVRHLK
EGMSRLELVPLHLPVPELASHPRMTRAQVLISDVDLLQLSAAVRVLEIEVKQDAPEKTVE
VTPEASENSEEDAGTD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttatatgaagagggtggcgatatcaaaattgccactgtgcagtcatcaacc
ggaactggtgacgcagaatcttggcaggcaactagtctttctggaaagaagattaagatc
aaggccaaagaggtttggctgcgctttgaaaagcctgaagcacaggcggttatggatgaa
gcccaggttttatctaaagacatcgacttgcagttactttgggattgcgctcctgacgag
gagtttggtttagtggatgtttcgctggaatattttggcgcgcaagctagcatccctcaa
caagttgctttagccattgccttgcagggagcccctgtctttttccggcgtaagggccgg
gggcgatttcaaagggcccctcttgagcagctccaggcaggtttggctgctcttgagcgc
aaacaaaaagagttagagcaacaggctatctggcagaaagaaatggttgccggaaacttt
ccagaaacattgcggtcttcagcgcagcaattacttttttcaccagataaaaatacattt
gcttataaagcgcttatcgccgcttgtactgagacaggagagtctccaccacaactgatg
attcggtgtggtgcgattgattcacctttggcatatcaccaagggatgttcctcaaggca
cattttccaaatggttcgactcatcagaatattggggtggatgaatcaacttatgcgcaa
gcgattgccgcgcttccagaggcagatgtaaaggcattctccattgacgattctggaacc
actgaaattgatgatgccctatcagtaagtactctagctgctggtggacatcgtattggt
attcatattgccgctcctggattagcgatcgctaaagatgacccgctagatcaagtggcc
cgcaatcgcatgtctacggtgtacttccctggtgacaaaattacgatgctccccgatgtg
gtcatcgagcaattttcattggatgagggctcagcaaggcctgctttgtcgatctatgta
gatatagatgaggatggtgttgttcaacgcgagacattacaaatgcgagcagagcgggtg
cctatggcagccaatttgcgtctagaagatttagagcatctggtgagcgaagagactttg
tttgatgaatcggagaattatccttaccgaaaagaattaggaatactgtggcaggctgcc
aaactgttacatgcgggccgtcaagaaaaacgtgtggctaatggtctgcgtgctgagcaa
ttgggagtgattgatcccaatgccttagcaagagacttttattttcagattcaagaccaa
gatggcattcagcatgttgagattgtgccccggcaacgcggatctattttggatacgatt
gttgcggagtggatgattttttgtaacagcgcttctgggcagttattggcagatcatggt
ttgccaggcttatttagaacccagaaaggctggggaccattacgcacccgtatgcaaacc
accccaggaccccacgagggattgggcttggactattacgcctggtgcacttcgccattg
cgccgctattccgacttagttaatcaatggcagttaattgccttagcaaagcacggtgtg
actgccaagatggtcgcgccatttcctccgcgtgatgcaacactgatggggattgctgca
gatttcgagtcatgctatcaagcctatggggaatatcaagatcgcctagaaaaatattgg
tgtttgcgttggatagcccaagatgatgactcgaagggtgtgtttgtacgtcacctcaaa
gagggtatgtctcgcctagagttggtgccattgcatctgcctgttcctgagttagcaagt
catccacgtatgacacgcgcacaagtcttgatttcggatgtagatttattgcaattgagt
gcggcagttagagtgcttgagattgaagttaagcaagatgcacctgaaaaaacagtggaa
gtaactccagaagcctcagagaattccgaagaagatgctggcacagattaa
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