Polynucleobacter asymbioticus: Pnuc_0604
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Entry
Pnuc_0604 CDS
T00502
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnu
Polynucleobacter asymbioticus
Pathway
pnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnuc_0604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnu03019
]
Pnuc_0604
Enzymes [BR:
pnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pnuc_0604
Messenger RNA biogenesis [BR:
pnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pnuc_0604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABP33822
UniProt:
A4SWF8
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All DBs
Position
590538..591959
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AA seq
473 aa
AA seq
DB search
MTNTATEITSTTGAGDQATPSDNTPATITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIP
HVLAGSDLMGAAQTGTGKTAAFVLPIIQQILRHASNSASPARHPIRALVLTPTRELAVQV
AENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEILIATPGRLLDHIGSKVANLSQVE
ILVLDEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVA
RQNAAADTVKQVVHMVSSGDKQRAIVKVLEARTRLGLSRQCIIFTNSRLGCAKLARALER
DGIKAGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPDMPCVINHELPYNAE
DFIHRIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDVKPLPEGAPSSSRPSSSA
APTKMSDPFFYMPYEPGAAPADSAGATKTEEKKAGITPAKPAVGALLGGFKKK
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgctactgaaataacttctactacaggggctggcgatcaagctacccct
agtgataacactccagcaacaatcacctttgctgattttggcttagacccgaaaattcaa
aaagcggttgctgaacagggttacagcataccgactccgattcaagcgcaatctattccg
cacgtgttggcgggaagcgatttgatgggcgccgcccaaacaggtactggtaaaaccgca
gcctttgtattgccgatcattcaacagattctgcgtcacgctagcaatagcgcctcacca
gcacgccatccaattcgcgcactcgtactgacaccaacgcgagagttggcagtgcaggta
gcagagaatgcggcgagctactccaaacatactgatttgcgcgctgcagttgtttatggc
ggcgtggatatgaaagagcaagtagccatactgcgtaatggcgtagagattttgattgct
accccaggacgattgttagatcacattggctctaaggtggccaatttatcccaggttgaa
atcttggtattggatgaagcagatcgcatgttggatatgggctttttgcctgacttgcag
cgcatcatcgatttaattccagcgcaaagacaaacattgttgttctctgcgactttctcc
ccagagattaagaagctagcacaaagctatttacgtactccggtaacggttgaagtggct
cgtcaaaatgccgctgctgatactgtaaagcaagtagtgcatatggtgtcttcaggcgat
aagcaacgcgcaattgtgaaagtactagaagcgcgcacgcgtctaggcttgtctcgacaa
tgcatcatctttaccaatagccgtttgggttgcgctaagttagcgcgtgccttagagcgc
gatggtattaaagcaggtgcaattcatggagataagagtcagggtgagcgtactttaact
ttggatgcttttaaatccggcgcaatcgaagctttggtagcaaccgatgttgctgctcgc
ggtttggatattcctgatatgccttgcgttattaatcacgaacttccttataacgctgaa
gattttattcaccgtatcggacgcactggtcgtgctggtagtaaaggtgatgcgattgct
ttggttgatgcgagcgagaaacgcttgctcgatgatattgaaaagttaatgaagcgtaag
ttagatgtgaagccattgcctgaaggagctccctcatccagtcgcccatcatcaagtgct
gcaccaaccaaaatgtctgaccctttcttctatatgccttatgagcctggcgctgctcct
gcagattctgctggagctacaaagactgaagagaaaaaagccggcatcacgcctgctaag
ccagcagtcggcgccctattaggcggctttaaaaagaaataa
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