Polynucleobacter asymbioticus: Pnuc_1055
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Entry
Pnuc_1055 CDS
T00502
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pnu
Polynucleobacter asymbioticus
Pathway
pnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnuc_1055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnu03019
]
Pnuc_1055
03016 Transfer RNA biogenesis [BR:
pnu03016
]
Pnuc_1055
Enzymes [BR:
pnu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Pnuc_1055
Messenger RNA biogenesis [BR:
pnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pnuc_1055
Transfer RNA biogenesis [BR:
pnu03016
]
Prokaryotic type
tRNA degradation factors
Pnuc_1055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
OB_RRP5_4th
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABP34271
UniProt:
A4SXQ7
LinkDB
All DBs
Position
complement(1058183..1060351)
Genome browser
AA seq
722 aa
AA seq
DB search
MTMFKKAVKSFQWGNHQVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVL
SINPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLI
VAGTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINELVAEAGKPEWDWTAAPK
DEPFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKEVMAKLQEEGDVDAVAVNDILFE
IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE
DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE
AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS
TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV
KEVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEGGTIAPLAGAAEVVAEEAPASGE
SA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgactatgtttaaaaaagcagtaaagagttttcaatggggcaaccatcaagtaacgatg
gaaacaggcgagattgctcgtcaatctggtggtgccgttatcgtgaacgttgacgacaca
gtagtaatgggcacagtagttgcctccaagtctgctaagccaggccaatcctttttccct
ttgactgttgattaccttgagaagacttacgctgcaggtaagatcccaggtggtttcttc
cgtcgtgaaggtcgtccatcagaaggtgagacattaatctcccgtttgatcgatcgtcca
ttgcgcccgttattcccagaaggcttcttgaatgaagttcaagtggtgattcatgtgttg
tctatcaaccctgatgttccttctgatattcctgcattgattgccgcttctgcagcatta
gctatttcaggtatcccatttgctggcccagtcggcgcagcacgtgttggttacgccaat
ggtcaatacctcttgaacccaactcgcaccgaacaagctactagcgaactcgatttgatc
gttgctggtacgcaagctgctgtattaatggttgagtctgaagctaaccagctttctgaa
gaggtgatgttaggtgctgttgtatatggtcatgaccaaatgcaaactgccattaacgca
attaacgaattagttgctgaagctggtaaaccagagtgggattggactgccgcgcctaaa
gatgagccattcattgccaaggttactgctttggctgaagcaccattgcgtgaggcatat
cagattcgtcaaaaaggcgctcgttcagacaagctcaaagaaattactaaagaagtaatg
gctaagttgcaagaagagggcgacgttgacgcagttgctgttaatgacatcttgtttgaa
atcgaagcgaaaattgttcgtagtcagattttgaatggtgagccacgtattgatggccgt
gatacacgcactgttcgtccaattgaaattcgtaatggcgtattgccacgtacacacggt
tcagcattgtttacccgtggtgaaacacaggctctcgtagtggcaactttaggtacagca
cgtgatgagcaaatcattgatgcacttgaaggtgaataccgcgatcgcttcatgttccac
tacaacatgcctccgtttgcaactggcgaaacaggtcgcgttggcagcccaaagcgtcgt
gaaattggtcatggccgtttagctaagcgtgctttgattccagtattgccaagcgcagaa
gattttgcatatagcattcgcgttgtttcagaaatcactgaatccaatggctcctcatcc
atggcatctgtttgcggtggttgtttagcaatgatggatgcgggtgttccagttaaggca
cacgttgctggtgttgctatgggcttgatccttgacggcaatcgttttgctgtgttgact
gatatcttgggtgatgaagatcacttgggcgacatggactttaaagtagctggtactgca
aatggtattactgcattgcagatggatattaaggttcaaggtattactaaagaaattatg
caagtggctttggcgcaagctaaagaaggccgtttgcacatcttgagcaaaatgcaagaa
gcaatgggttcagttcgtacagaattgtcagctcatgctccgcgtatggtgtcattcaag
attcacccagataagattcgtgaagtgatcggtaaaggcggcgcaactatccaagcctta
actaaagaaaccggttgcagcatcgatattaaagatgacggcacagtaactatcgcctca
acaagtgctgaaggcatggctgaagccaaagctcgcattgaaggtattactgctgaagct
gaagtaggcaaaatctacgaaggtccagtagtgaagttgcttgagttcggtgctttagtc
aacattcttcctggtaaggatggcctcttgcatatttctgagatctctaacgagcgcgta
aaagaagtgaaggattatttggcagaaggccaagtggttcgcgtgaagttattggctgct
gatgagcgtggtcgtttgcgtttatctttgaaggctgcaatggctgatgaaggtggcacg
attgctcctttggctggtgctgctgaagtggtggctgaagaagccccagcttctggcgaa
tctgcttaa
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