Polynucleobacter asymbioticus: Pnuc_1261
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Entry
Pnuc_1261 CDS
T00502
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pnu
Polynucleobacter asymbioticus
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnu03019
]
Pnuc_1261
Enzymes [BR:
pnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pnuc_1261
Messenger RNA biogenesis [BR:
pnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pnuc_1261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
HA2_C
AAA_30
AAA_22
NACHT
HA2_N
nSTAND3
T2SSE
AAA_25
AAA_11
SRP54
AAA_23
ResIII
PhoH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ABP34475
UniProt:
A4SYB1
LinkDB
All DBs
Position
complement(1326664..1330656)
Genome browser
AA seq
1330 aa
AA seq
DB search
MPASNTRRKLEIRFPEELPVSGQRQIIKDALQSHQVVIVCGETGSGKTTQLPKICLDLGR
GTINGGKLIGHTQPRRIAATATAKRIAQELGSPIGQDVGYQVRFADKTSHSASIKLMTDG
ILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKRPDLKLIITSATIDAQR
FAEHFAINGKVAPVIEVSGRLFPVEQRYSPLEPDAKPDGKKASKAAKEISDAVTEEIASL
WREGAAGSGDVLVFLPGEREIRDCAEALRKDHVLQQRFHPEILSLFARQSVAEQERVFSP
GNGRRIILTTNVAETSLTVPNIRYVIDSGLARVKRYSYRNKVEQLQIESISQAAANQRAG
RCGRVSDGICVRLYSELDYQSRSQFTDPEILRSSLASVLLRMSSLRLPKIQHFPFIDKPL
GRAIADGVQLLDELGAIEFDESEPADGKDINNSFKLTAIGKQLADLPLDPCIGRMLLAAK
EQNALKEVTIIASALATQDPRDRPMDQATAADQAHLQFADERSEFLSFVKLWNWYQDALQ
HKHSNRQLETLCKSKFLSPRRLREWRDIHGQLHTMLGEKGWKENGLAATYEQVHLSLLTG
LLGYVAKKEEDEKSQDRNSKTGGYVGARGIRPFIWPGSTIGKKAGAWILAGELQETNRMY
ARTIAKIEPQWVERVAAHRLIKSLSDPFWDNRQGEVMAFERGTLYGLPIYHGRRVRYEPH
NPDETRELFIRQALVQEEMFGRMDTPALQRETETDAKKKYPNLFNFFWHNRRLIKEIEAL
EHRSRRPDVLVDDDLLFAFYDSRIPKEVRSRESLKAWFSKDPELDSQLRLEKADLMRHEA
AGITVDRYPKNMLVGGAQLSLTYHFEPGSPKDGVTLVVPLTQLNQVDGRRCEWLVPGMCE
EKVHLLLKSLPQKLRRHCVPLPDYAKSFLERKLEEKQFGVGDFLDSLISDIRKERGLEIK
RTDFRPESLPLHSSMNFRLIDEHGRQLEVERNLSRLRSEYGETARSAFQAIAQETAQVEL
GVEPTQKAGSNSSNEANARKVEQGGYRAWEFGELPETLEIQKGNKTLFGYPALVDRIDYC
DLEVFDDLLEARKQHALGLRRLFALSNKDTLKALQKQLPGIRELGLLFINVGSVEGLIDH
ILNLALERAFMGESLPVNAEQFTERLQAGKPRLALIAQEISRHALNALQAHADLQKKIAS
AKAASPSAYADIQAQMQGLIFPKFVADIPYAQLVHVPRYLKAIAMRIDKLRSNPSRDAQC
QKDWESVARPWQKLMQGNKGAASYAMTEDQALTDFRWQLEELRVALYAQELKTPTPMSLK
RLEKVLASLR
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcctccaacacccggcgcaagctagaaatccgctttccggaagaattacctgtc
tcaggtcagcgtcagatcatcaaggatgccctgcagagccaccaggtagtgatcgtatgc
ggtgagacgggttcaggtaagaccacccagcttccaaagatctgcctagatctgggtcgt
gggacgatcaatggcggcaagctaatcggccacacacagcctcgccgaattgcagccact
gccacagcaaagagaattgctcaagagctaggctctcctattggtcaggatgtgggctac
caagtacgctttgctgacaagactagtcatagcgcttcaatcaagttgatgactgatggc
atcttgctggctgaaactcagcgcgatcctcaactacgtgcctatgacacactcattatt
gatgaggctcatgaacgtagtctcaatattgatttcttattaggttatttgcgccagctg
ctgcccaagaggccagatcttaagctgatcatcacctcagcaaccattgatgcccagaga
tttgcagagcacttcgccataaatggcaaagtcgcaccagtcattgaagtgagcggccgt
ttgttcccagtagagcagcgttactcacccttggaaccagacgctaaacctgatggtaaa
aaggcatccaaggctgccaaggaaatttcggatgcggtgacagaagagattgcgagctta
tggcgtgaaggtgccgctggttcaggagatgtgctggtttttttaccgggcgaacgtgag
atccgagattgcgcggaagctttgcgcaaggaccacgtgttgcagcaacgctttcaccca
gagattttgagtttgtttgcccgtcaatcggttgcggagcaagaaagagtattcagccca
ggaaatggacgccgcatcattttgacgaccaacgttgccgagacctctttaaccgttcct
aatattcgttatgtcattgacagtggcttggcacgggtaaagcgctactcctatcgcaat
aaggtagagcaactccagattgagtccatctctcaagcggcggccaatcaaagggcaggc
cgctgcggtcgtgtctcggatggtatctgcgtacgtctctatagtgagctggattatcaa
agccgctctcaatttaccgaccctgaaattctgagaagctctttggcttcagtgcttcta
cgtatgagttcattgcgtttgcctaagattcaacactttccttttattgataaaccttta
ggaagagcgattgccgatggtgtgcaacttctagatgagttgggcgccattgaatttgac
gaatctgagccggcagatggaaaagatattaacaatagctttaagctcaccgccattggt
aagcaattagcagatttaccgcttgacccctgtattggcagaatgcttttagcggcaaaa
gaacagaacgccttaaaagaagtgaccattattgcttctgcattagctacgcaagaccct
cgcgatcgccccatggatcaagctacggcggcagatcaagctcatttgcagtttgcggat
gaacgctcagagtttttgagtttcgttaagctgtggaattggtatcaagatgctttgcaa
cataagcatagcaatcgtcagctagagactctctgtaaaagtaaatttctgtcaccgcgc
cgtctgcgtgagtggcgtgatattcatggtcagttgcacacgatgttaggcgagaagggc
tggaaagagaacggcttagctgcaacttatgagcaggtacatctatccctgctaacgggt
ttgcttggttatgttgccaaaaaagaagaggatgaaaaatcccaagaccgcaatagcaaa
accggcgggtatgttggcgcacgtgggattcgcccctttatttggccgggatcaacgata
ggtaaaaaggcaggcgcctggattctggctggtgagctacaagaaaccaatcgcatgtat
gcacgcacgattgccaaaatagaaccccaatgggtggaacgagttgctgcacatcgcctg
atcaaatccctcagtgatccattttgggacaaccgccaaggtgaggtcatggcctttgag
aggggcactttatatggcttacccatctaccatggtcgccgagtccgttatgagccccat
aaccccgatgaaacgagagaattatttattcgccaggctttagtgcaagaagagatgttt
gggcgcatggatactccagcacttcagcgagagaccgaaacagatgccaagaaaaagtat
cccaatctctttaacttcttttggcataaccgtcgacttattaaagaaattgaagcgcta
gagcatcgctcgcgtcgccctgatgtattggtagatgacgatctactctttgccttttac
gactccagaattccaaaagaggtgcgtagtcgtgaaagtctcaaagcatggtttagtaaa
gaccctgaattagatagtcagctccgcttagaaaaagccgatttgatgcgacatgaagcg
gctggtatcacagtagatcgttatcctaaaaatatgttggtaggtggtgcacagctcagt
ctgacttatcactttgagcccggcagccctaaggatggtgtgacgctagtcgttcctttg
acccaactaaatcaggtggatggccgccgttgtgaatggttagtgcctggcatgtgtgag
gaaaaggttcatctattgcttaaatcattgccccagaagttacgacgtcactgtgtgccg
ctacccgattatgcaaaatcttttcttgagcgaaaactagaagagaagcaatttggagta
ggcgactttctagatagcctcattagtgacatccgcaaagagcgcgggctcgaaattaaa
cgtacagactttaggcctgaatctttgccgctgcactcatcaatgaactttcgcctcatt
gacgaacatggccgtcagttggaggtagagcgtaacttatctcgcttgcgttccgagtat
ggtgagacggcccgtagcgccttccaggcaatagcccaagagactgcgcaagtagagtta
ggtgttgagcctacccagaaggctggcagtaacagctctaacgaggctaatgcccgcaag
gtagagcagggcggctatcgcgcatgggaatttggtgagctacctgaaactttagagatt
caaaaaggcaacaaaactttatttggctatcccgctttagtggaccgtatcgattattgt
gatctagaggtatttgatgatctgctggaggctcgtaaacagcatgctttaggattgcgt
cgcttgtttgcgttgagtaataaagatacgctcaaggcattacaaaaacagttgcccggc
attcgagaattgggattgctttttattaatgtcggttcagtagaaggtttaatagatcac
attctcaatcttgcactcgagcgtgcgttcatgggtgaatcccttccagtaaacgccgaa
caatttacagagcgattgcaagcaggtaaacctaggttagcgctgattgcccaagagatt
tctcgtcatgctttaaatgcattgcaggcccatgcagatcttcagaaaaagatagccagt
gcaaaagccgcctcaccaagtgcttatgctgatattcaagcgcagatgcagggattaatc
tttccgaagtttgtggctgatataccttatgcccaattggttcatgtgccacggtattta
aaagcgattgcgatgcgaattgataaattacgctctaacccgagtcgcgatgctcagtgc
cagaaagactgggaatccgttgcacgtccatggcaaaagctcatgcaaggaaataaaggg
gctgcttcgtatgcaatgactgaagaccaggccttaactgattttcgatggcagctagaa
gagttacgggtagctttatatgctcaggagcttaaaacaccaacccctatgtccttaaag
cgtctcgaaaaggttttagccagcttgcgctag
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