Polynucleobacter asymbioticus: Pnuc_1271
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Entry
Pnuc_1271 CDS
T00502
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pnu
Polynucleobacter asymbioticus
Pathway
pnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnuc_1271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnu03019
]
Pnuc_1271
03016 Transfer RNA biogenesis [BR:
pnu03016
]
Pnuc_1271
Enzymes [BR:
pnu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pnuc_1271
Messenger RNA biogenesis [BR:
pnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pnuc_1271
Transfer RNA biogenesis [BR:
pnu03016
]
Prokaryotic type
tRNA degradation factors
Pnuc_1271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ABP34485
UniProt:
A4SYC1
LinkDB
All DBs
Position
complement(1340426..1342813)
Genome browser
AA seq
795 aa
AA seq
DB search
MRKAKDLMPREADRLGTVQGHRDGFGFVIPDDGGEDIFLSEREMSRVMHGDRVNVRVLGT
DRRGRPEGQIVEVVLHANKVVIGRLLNENGVLIVAPEDKRIGHDILIPPKGQGVAKLGQV
VSVEIIDYPDSYRQAVGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSAAALKEAAALPDT
VQQGDLEGRVDLRDVPLVTIDGADARDFDDAVYCEPVMYGQTKAWRLIVAIADVSHYVKP
GQPLDDEGLLRATSVYFPRRVIPMLPEKISNGLCSLNPGVDRLCMVCDSVVDNNGIVLAY
QFYPAVMHSAQRFTYDTVWEILSNSKGPEATRFAQFRPLLTNLYSLYKILLAAREKRGAI
EFETTETQIISNELGKILRIEPRIRNDAHRLIEECMLTANVCAADFIDKNKHLSLYRVHG
EPSEEKLVTLRQVLRTSGLSLGGGDKPKPRDFAKLIREIKDRPDANMLQSVVLRAMQQAM
YQPDNEGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKSILQKKPYVPVLPPKVPLNLTLPR
KGKGRENAVNAKKSQSDAKAGAAKGVKVPKGANAALPIWGQLGVHCSSNERRADEASRDV
EAWLKCYYMRDHLGQEYSGTVTGVANFGLFIQLENLFVEGMVHVTELGGDYFQYDEARQE
LRGERTGIRYRLGDRLHVLVSRVDLDARKIEFSLVKSFGAEGGGGSSGRRQVLLAADTGR
PNKKAAPNKSRPAHKAPQKPSGINVNAAKSAGTLGANQSKSQASRKSSKAAKPSRPVGKP
AGSKPPVRSTKARRK
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagcaaaagacttgatgccgcgtgaggctgaccgattaggaacagttcagggg
catcgagatggatttggatttgttattcccgatgatggtggtgaagatatttttctctcc
gagagagaaatgtcacgcgtcatgcatggcgatagagtcaatgtcagagtattaggaaca
gatcgacgaggccgtccggaagggcaaattgttgaggtagttctgcacgctaacaaagtg
gtgatcggtcgtctcttaaatgagaatggtgtattaattgttgcgccagaggataaacgt
attggccacgatattttgattccacctaaaggccaaggtgtcgccaaattagggcaagta
gttagcgttgaaatcattgattacccagatagctatcgccaggcggtaggtcgtgtagtt
gaggttttaggtgagattgatgatcccggaatggaaatcgaaatagcggtacgtaagtat
ggcgttcctcatgaattctcagcagctgccttaaaagaagcggcagcattgccagatact
gtgcagcagggggacttagagggccgcgttgatttacgcgacgtacctctagtgacgatt
gatggagcagatgcgcgtgactttgatgatgccgtctattgcgagccagtaatgtatggg
caaactaaggcttggcgtttaattgtcgcgattgccgatgtttcgcattacgttaagcct
ggacaaccattggatgacgaaggcttattgcgtgcaacctccgtttacttcccgcgccgc
gttatcccgatgctcccagaaaagatctccaatggtctttgctctttaaatcctggggtt
gatcgcctttgcatggtctgtgattctgtagtggacaacaatggcatcgtattggcatac
cagttctatccagcagtcatgcattcggctcagcgctttacctatgacactgtttgggaa
attctctccaacagtaaagggccagaggctacgcgctttgcacagttccgtcctttatta
acgaatctatattctctttacaaaattttattggctgctcgtgagaagcgtggcgcaatt
gagtttgaaacgactgagacccaaattattagcaacgagcttggcaagatcttacgtatt
gagccgcgcattcgtaatgatgcacatcgcttaattgaagaatgtatgttgactgcaaac
gtttgtgcagctgactttattgataagaacaagcatctcagtttgtaccgtgtacacggt
gagccttcagaagagaagttggtgactttgcgtcaggtgctgagaacttcaggcctttct
ctaggcggtggcgacaaaccaaagccgcgtgactttgctaaattgattcgggagattaaa
gatcgtccggacgccaatatgctgcaatcggttgttctacgggcaatgcaacaggcgatg
taccagccagataatgaaggccactttggcttggcttatcccgcttactcacatttcacg
agcccaattcgtcgctacccagacttgttaactcatcgagtcatcaaatcgattctgcag
aaaaagccttatgtaccggtcttgccgcctaaggttccgcttaaccttaccttgccacgc
aagggtaagggtcgtgagaacgcagttaatgccaagaaatctcaaagcgatgcaaaagct
ggtgcagcaaagggtgtaaaagttcccaaaggcgccaatgccgctttaccaatttggggt
cagctgggcgtacattgctcatcaaatgagcgccgtgctgatgaagcatcgcgcgatgtc
gaggcatggttgaagtgctattacatgcgcgatcatttgggtcaagagtattccggcacc
gttacaggtgttgccaattttggattattcattcagttggaaaatctctttgtagaaggc
atggttcacgtaaccgagttgggtggggactacttccaatacgatgaggctcgtcaagaa
ttgcgcggtgagcgtacaggtattcgttaccgcttaggtgatcgcctacatgtattggtc
agccgggttgatttagatgcgcgcaaaattgaatttagtttagttaaaagttttggcgca
gaagggggcggtggatcttctggtcgacgtcaggtgttattagctgccgatactggtaga
cccaataagaaggctgcccccaataaaagtagacctgcccataaagcaccccaaaaacca
agcggcattaatgtgaatgcagctaaatcggcggggactttgggtgccaaccaatccaag
agtcaggcaagtcgcaagagcagcaaggctgctaagccaagtcgccctgtaggcaaaccc
gctggtagcaagccgcctgttcgcagtaccaaagcgcgccgtaaataa
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