Polynucleobacter asymbioticus: Pnuc_1342
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Entry
Pnuc_1342 CDS
T00502
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnu
Polynucleobacter asymbioticus
Pathway
pnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnuc_1342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnu03019
]
Pnuc_1342
Enzymes [BR:
pnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pnuc_1342
Messenger RNA biogenesis [BR:
pnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pnuc_1342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ABP34556
UniProt:
A4SYJ2
LinkDB
All DBs
Position
1417880..1419160
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AA seq
426 aa
AA seq
DB search
MLFTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL
QRLSSIKASSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA
IAAGLDILVATPGRLLDLMSQKCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQR
QNLLFSATFSTEIKALADGLLNKPELIEVARSNSANEAIAQLIHPVDRNQKHPLLAHLIK
SNDWKQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTALVA
TDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIE
KLIKQKLPQEVIAGFEPDPNAIAQPIQLRSQQHQQSRRPKVAGSGGAPAKKAPAKRSSPP
KRSFNR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgttatttactgatctcggtttatctgaacccattcttcgcgccattgcagaagagggt
tacaccagccccacccccattcaagcaaaatccattcctgcagtactcaagggcggagat
ctcttagctgcagcacaaactggcacaggcaagactgctggctttacgcttcctatattg
caacgcctaagctctatcaaggcaagctcaggaaagcgtgtgttgcgcgttctgattttg
actcctacacgtgagttagcagcccaagtacaagaatccgtcgttacttatggcaagtac
accggcttaaagtcaacagtcatttttggtggcgttggtgcaaatccccaaatcaaagcc
attgcagcaggtcttgatattttggttgctaccccaggtcgcttgctagatctcatgtct
caaaaatgtgtttcactgaacgatattgagatcttggttttagatgaagcggatcgcatg
ctagacatgggcttcttgcgcgatattaaaaagatattggctgcgttgcctaagcaacgt
caaaacctcctgttctcagcaaccttctctactgaaattaaagcgcttgccgatggccta
ttgaataagcctgagctcattgaagtggcgcgaagtaatagtgctaatgaagctattgca
caattgattcatccagtcgatagaaatcaaaaacatcctttgctggctcatttgatcaag
tccaacgactggaaacaagttcttgtatttacgcgcaccaagcatggagccaataagcta
gttactcagttagaaaaagatggcattacgagcatggcgattcacggcaataaaagccaa
accgcacgcactaaagctttggcagatttcaaggcaggaaagctcacagcattggtggct
accgatatcgctgcacgcggaatcgatatcgaccaactaccccatgtggtgaactacgat
ttgccaaatgtttctgaagactatgtgcatcgtattggccgtaccggacgcgctggctca
aatggtgttgcagtatctctagtctgcgtagacgaacatcaaatgcttagagatatcgaa
aaactcattaagcaaaaattaccgcaagaagttattgcaggttttgagcctgatccgaat
gcaattgctcagcctattcagttgcgtagccaacaacatcaacaatccagaaggccaaaa
gtagcaggatctggtggcgcaccagccaaaaaggcccccgctaaacgcagcagcccacct
aaaagatcatttaaccgctaa
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