Paenarthrobacter nicotinovorans: JMY29_01435
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Entry
JMY29_01435 CDS
T08055
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pnv
Paenarthrobacter nicotinovorans
Pathway
pnv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JMY29_01435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnv03400
]
JMY29_01435
Enzymes [BR:
pnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JMY29_01435
DNA repair and recombination proteins [BR:
pnv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JMY29_01435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
UKF04291
LinkDB
All DBs
Position
complement(289756..292326)
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AA seq
856 aa
AA seq
DB search
MAGKQQERVTVEGHELTLTNLGKIIYPETGTTKAEVLEYYATVAPFLIPAAANRPVTRKR
WVNGVGTAEHPGEVFFQKNLEDSAPRWIPRAAIQHSDHTNVYPMVNNLATLTWMAQIASL
EIHVPQWQVDAAGKPLRPDRFVLDLDPGPGAGLPQCVEVATLARSILQDMGMEPVPVTSG
SKGIHLYTGLDGTLKSEQVSAFAHELARALEADHPDLVVSDMKKSLRKGKVLVDWSQNSG
NKTTIVPYSLRGRAQPTVAAPRTWQELASPSLDQLDYTEVMERVSSGKDHFAPISDRHLP
PHSEDDNDDAGASAVSGGGRERGVTVGNRLAKYVGMRDPGKTPEPFPSSSAASAVSQGPA
PSAQPKPGDPAPAGGIFVIQEHHARRYHLDLRLEHNGVLASWALPRGVPETSERNNLAVH
TEDHPMEYATFAGVIPKGEYGAGTMTIWDRGEFTCEKWRDGKEVIATLTGEPGGGLGGTK
RLALINTGDRWLIHLMKEQPGARRTAATAPAAKRQAPPEPESAPEPKQEPQPLRDYAPML
ATSGTTADLRGDNWLYELKWDGIRAIITGTEGRIRLMSRNGNDLTAAYPELTDRACWPEG
DFVADGEIVALGKGSRPDFGRLQLRMNLVKTADIERARVSVPVQLMLFDLLYDAGADLSG
LPFVERRERLDAFAGRMPGGCPVHISAVLDHDVDDLMTSAADLGLEGMMAKKADSRYVVG
RRSASWIKLKLEQSQEVVVGGWRPGAGARSGTFGALLLGIPDGDTLHYVGRVGTGFKDWQ
LRDIMEQLEPLVVDDSPFKDIPREDAAGAHWVKPVLVAEVTFGNWTGPGRLRHPVWRGWR
PDKSPSDVSQPNQGDR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggcaagcagcaggagcgggtgaccgtggaaggccacgaactcaccctcaccaac
ctgggcaaaatcatttacccggaaaccgggaccaccaaggctgaggtccttgagtactac
gccaccgtggcccccttcctcatccccgccgcggccaaccggcccgtcacgcgcaaacgc
tgggtcaacggcgtgggcacggccgaacatcccggtgaggtgttcttccagaagaacctg
gaggactcagcgccacgctggatcccccgggccgccatccagcattcggaccacaccaac
gtctatccgatggtgaacaacctggccacgctcacgtggatggcccagatcgcgtccctg
gaaatccacgttccgcaatggcaggtggatgctgcgggcaagcccctcaggccggaccgc
ttcgtcctggatctggaccccggtcccggcgccggactgccccagtgcgtggaagtggcc
accctggcccgttccatcctgcaggacatgggcatggaacctgtccccgtcaccagcgga
agcaaaggcatccatctctatacagggctcgacggcacgttgaaatccgagcaagtgtcc
gcgttcgcccatgagctcgcgcgcgccctggaagccgatcaccctgacctcgtggtcagc
gatatgaagaagtccctgcgcaagggcaaggtcctggtggactggagccagaacagcggg
aacaagacaacgatcgtgccgtactccttgcgtggcagagcccaaccaacggtggcggct
ccccggacgtggcaggagctggcctctccttcccttgaccagttggactacacggaagtg
atggaacgggtcagttcgggcaaggaccacttcgcgcccatttcggaccggcacctgccg
ccgcatagcgaggacgacaatgacgacgccggcgcgtccgctgtgtcgggcggtggccgc
gagcgcggggtaacggtcgggaatcgtctcgccaaatacgtcgggatgcgcgatccgggc
aaaaccccggagccgtttccgtcgtcgtcggctgcttctgcggtgtcgcagggccccgct
ccctccgcgcagcccaagccgggcgatcctgcgccggccggcggaatcttcgtgatccag
gagcaccacgcccgccgctaccatcttgacctgcgcctggagcacaacggcgtcctggct
tcctgggcgctgccccgcggtgtcccggaaacgtccgagcgaaacaacctggccgtgcac
accgaggaccaccccatggagtacgcaacgttcgccggggtcattccgaagggcgagtac
ggggcgggaaccatgaccatttgggaccgcggcgagttcacgtgcgagaagtggcgcgat
ggcaaggaagtcatcgcgacgctcacgggcgagccgggtggtggactgggcggcaccaaa
cgcctggccctgatcaatacgggcgaccgctggctgatccacctgatgaaggaacagccg
ggcgccaggcggaccgccgcaaccgcgcccgcagcgaagcgccaggccccgccggaaccg
gagtcagcgcccgagcccaagcaggagccacagcccttgcgcgactacgctccgatgctc
gccacgtccgggaccaccgctgatcttcgcggcgacaactggctgtatgagctcaagtgg
gacggtatccgggccatcatcaccggtaccgagggccggatccgccttatgagccgcaat
ggaaacgacctcaccgcggcctatccagaactgacggaccgcgcgtgctggcccgaaggg
gacttcgtggcggacggcgaaatcgtcgccctcggcaaggggtccaggccggatttcggc
cggctgcagctccgtatgaacctggtgaaaacggccgacatcgagcgggcccgggtctcg
gtgccggtacagctcatgctctttgatttgttgtacgacgccggcgcggacttgagcggg
ctgcctttcgtcgagcgtcgcgaaaggctggacgcgttcgccggacgcatgcccggcggc
tgcccggttcacatttccgccgtgttggatcacgacgtcgacgacctcatgaccagcgcc
gcggatctgggcctggagggcatgatggccaagaaagccgacagccgttatgtggtcggc
cgtcgcagtgcttcatggatcaagctcaagctggagcagagccaggaggtagtggtgggc
ggctggcggcccggcgcgggcgcccgaagcggaactttcggggcgttgctgctgggcatt
cccgacggcgacaccttgcactacgtgggaagggtgggcacggggttcaaggactggcag
ctgcgggacatcatggagcagttggagccgctggtggtggacgactccccgttcaaagac
attccgagggaggacgcagccggagcgcactgggtgaagccggtgctggtggccgaggtg
actttcggcaactggacaggccctggcaggcttcgtcatccggtgtggcggggctggcgt
ccggacaagtctccctcagacgtcagccagcccaaccagggggatcgataa
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