Paenarthrobacter nicotinovorans: JMY29_06435
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Entry
JMY29_06435 CDS
T08055
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pnv
Paenarthrobacter nicotinovorans
Pathway
pnv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JMY29_06435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnv03400
]
JMY29_06435 (mfd)
Enzymes [BR:
pnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JMY29_06435 (mfd)
DNA repair and recombination proteins [BR:
pnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JMY29_06435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
GAP1-M
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UKF05216
LinkDB
All DBs
Position
1351965..1355597
Genome browser
AA seq
1210 aa
AA seq
DB search
MSLNGLRRALAEDKTFARVRTEAERSFSDRNADYQISAPTGMRAVLLAEMADALADTGAD
DAAAPVVLAVTATGREAEDLTAALCSYLPADSVATFPSWETLPHERLSPRSDTVGRRLSV
LRRLTHPETSTAAPLRVVVAPVRAVVQPIVAGLGDLVPVTLQVGQERSFTDVVRALSDAA
YARVDMVTHRGEFAVRGGILDVFPPTEDHPIRVEFFGDEVDQMRWFAVADQRSLSAPGIH
HPTELHAPPCREILITPSVMSRAAKLKADMPAAADMLEKIAGGIAVEGMESLAPVLVDAM
VPFVDQLPAGSLSVVIEPEKVRTRAHDLAATNEEFLEAAWSTASDGGAAPLDLSSQASTD
LHAASFRSLTDTRSAALEHGVSWWSITSLASDEDLVLDIDVLNMRAREPRGYQGDVAEML
EFIGSRVREQWRVVVVTDGPGPAQRLAELFHDAEIPCSRVDSLDQEPQPGIIEVTTAAVG
RGFVLDGLKLGLLTEADLLGRATASSTKDMRRMPSKRRNAVDPLQLHAGDFVVHEQHGIG
RFVELIQRKVTGTSSSDAGLREYLVLEYAPSKRGAPGDRLFVPTDQLDQVTRYVGGDTPA
LSKMGGADWASTKSRARKAVKEIAGELIRLYSARMASRGHAFAPDTPWQRELEEAFPYVE
TPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL
AQQHYETFTERFSGFPLRVKPLSRFQTSKEAKETAEGVKSGAVDVVIGTHRLLSKDFEFK
DLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPE
ERHPVLTYVGPYTNKQTSAAIRRELMREGQVFFVHNRVSSIERIAAQIRELVPEARVEVA
HGQMSESRLEKIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQLRG
RVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNLLGG
EQSGHIQGVGFDLYIRLVGEAVAEYRGEAEEKAAEMKIELPVNAHLPHDYVPGERLRLEA
YRKLAAAITYEAIDEVLAELVDRYGEPPLPAQNLIAVARFRVGAREAGLSDVALQGNFIR
FSPAQLPESKTMRLNRMYPGSQVKPALDAVLIPKPKTARIGGRDLQDAEILQWANNVIEA
IFAEAPVKAG
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaacggtctgcgccgcgcactggcggaggacaagactttcgcgcgcgttcgt
accgaggcggagcggtccttcagcgaccggaacgccgactaccagatcagcgcccccacg
gggatgcgtgcggtgttgctcgccgaaatggccgatgccctggcggacaccggcgccgat
gacgcggcagccccggtggtcctggccgtgaccgccaccggccgtgaagccgaagacctc
accgcggcgctctgctcctacctccccgcggactctgtggccaccttccccagctgggaa
accctcccgcacgagcgcctttcgccgcggtcggacaccgtgggacgccgcctgtccgtt
ctgcgccgcctgacccatccggaaacctcgacggcggccccgttgcgtgtggtggtggct
ccggtccgcgctgtggtccagccgatcgtggccggcttgggtgacctggtgccggtcacc
ctgcaagtaggccaggaacgctccttcaccgacgttgtccgggccctctccgacgccgcc
tacgcgcgcgtcgacatggtgacgcaccgcggcgaattcgccgtccgtggcggaatcctc
gatgtcttcccacccaccgaggaccacccgatccgggtggagttcttcggcgacgaggtg
gatcagatgcgctggttcgccgtggccgaccagcgttccttgagtgcacccgggatccac
caccccacggaactgcatgcccctccgtgccgggaaatcctgatcacaccctcggtaatg
tcccgtgcggcgaagctgaaggcagacatgcccgcggcggccgacatgctggagaagatc
gcagggggcatcgccgtggagggcatggaatccctggccccggtgctggtggatgccatg
gttccgttcgtggaccagctcccggccggctccctgtccgttgtgatcgaacccgagaag
gtgcgcacgcgcgcgcacgacctcgcggcgaccaacgaagagttcctggaagcggcctgg
tccacggcgtccgacggcggtgcggcgccccttgatttgtcgtcacaggcctccactgac
ttgcacgccgccagtttccgctcactgaccgatacccgctcggcagcgctggaacacggc
gtgtcctggtggtccatcacctccctcgcctctgacgaggacctggtcctggacatcgat
gtcctcaacatgcgtgcccgcgaaccgcgtggctaccagggagatgtggccgagatgctg
gagttcatcggctcccgtgtccgcgagcagtggcgcgtcgtagtggttacggacggcccg
ggtcccgcgcagcgcctggctgaactgttccacgacgcagagattccctgttcccgcgtc
gactctctggatcaggaaccccaaccgggcatcatcgaggtgaccactgccgccgtcgga
cgcggttttgtcctggacggcctcaaactggggctgctgaccgaagccgacctgctggga
cgggcgacagcgagctccaccaaagacatgcggcgcatgccgtccaaacggcgaaacgcc
gtggatcctttgcagctgcacgcgggtgacttcgtggtccacgaacagcacggaatcggc
cggtttgtggagctgatccagcgcaaggtgaccgggacgtcgtcgtccgacgccgggctg
cgcgagtatctggtgctggagtacgcgccgtccaagcgcggtgcccctggcgaccggctg
ttcgtaccgacggaccagctggaccaggtgacccgctacgtgggcggggacacgcctgcg
ctgagcaaaatgggcggcgcggactgggccagcaccaagtccagggcacgcaaggccgtc
aaggaaatcgccggggaactgatccggctgtactctgcccgcatggcatcccgcggccac
gcttttgcaccggacacaccgtggcagcgcgagctcgaagaagcgttcccctacgtggaa
acacccgaccagttgaccaccatcaacgaggtcaaagccgacatggagcgggaaatcccc
atggaccggttggtatcgggtgacgtcggctacggcaagaccgaaatcgccgtccgcgcc
gccttcaaggctgtccaggacggcaagcaggtggcggtgctcgtgccaaccaccctgttg
gcgcagcagcactacgaaaccttcactgaacgcttctccggcttcccgctgcgcgtgaag
ccgctgtcccggttccagaccagcaaggaagccaaggaaacggccgagggcgtcaagagc
ggcgctgtcgacgtcgtgatcggtacccaccggctgctgtccaaggacttcgagttcaag
gacctcggcctggtgatcgtggacgaagagcagcgcttcggcgtggaacacaaggaagcg
ctgaagaagatgcgcaccaacgtggacgtcctggcgatgagtgccacgcccattccgcga
acactggagatgtccctgacgggaatccgcgaaacgtccacactggccacaccgccggag
gaacgccacccggtgctgacctatgtaggtccgtacaccaacaagcaaacctccgccgcg
atccgccgtgaactcatgcgcgaagggcaggtgttcttcgtccacaaccgggtgtcctcg
attgaacgcattgccgcgcagatccgtgaactggttcccgaagcccgggtggaagttgcc
cacggccagatgtccgagagccgcctggaaaaaatcatcgtggacttctgggaaaaacgc
ttcgacgtcctggtgtgcaccaccatcatcgaaaccggcctggacatctccaacgccaac
accttgattgtggacggggccgacaagtacggcctctcgcagctgcaccagctccgaggc
cgcgtaggccgtggccgtgagcgcgcctacgcctacttcctctacccttccgagaagccc
ttgggtgaggtggcgctggaacggctcaaggcagtggcggcacacaacgagctcggcgcc
ggcatgcaactggccatgaaggacctggaaatccgcggcgcaggcaacctgctcggcgga
gaacagtccggccacatccaaggtgtcggcttcgacctctacatccggcttgtgggcgag
gccgtggccgagtaccgcggtgaggctgaagagaaggccgccgagatgaagatcgagctg
ccggtcaacgcgcacctgccccatgactatgttcccggggagaggctgcgtcttgaggcg
tatcggaagctcgctgccgccatcacatatgaggccattgatgaagtcctggccgaactc
gtggaccgttacggtgagccgccgctgccggcccaaaacctcattgccgtggcgcgcttc
cgggtgggtgcccgcgaagccggcctgtccgacgtcgcgctccaaggcaacttcatccgc
ttctcgccggcgcaactgcccgaatccaaaaccatgcgcctgaaccgcatgtacccgggc
tcccaggtcaagcctgcgctcgacgccgtgctgatccccaagcccaagacggcccggatc
ggcggacgtgacctccaggacgccgagatcctgcagtgggccaacaacgtcattgaagcg
atcttcgccgaagcccccgtgaaggcaggctag
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