Paenarthrobacter nicotinovorans: JMY29_13165
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Entry
JMY29_13165 CDS
T08055
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pnv
Paenarthrobacter nicotinovorans
Pathway
pnv03420
Nucleotide excision repair
pnv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JMY29_13165
03430 Mismatch repair
JMY29_13165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnv03400
]
JMY29_13165
Enzymes [BR:
pnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JMY29_13165
DNA repair and recombination proteins [BR:
pnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JMY29_13165
MMR (mismatch excision repair)
Other MMR factors
JMY29_13165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UKF02713
LinkDB
All DBs
Position
complement(2836433..2839933)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTELLDGVGASTFDGGAGTPEPRFTPSQLADILGEKNHPTSEQSDIISSALTPRLVIAG
AGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAGELASRIRSKLATLQRVAAEDDG
TIGFPADLLGADDLEPRVSTYHSYASAIVSDYGLRLGIERDVVLLGGAQSWQLASEVVEA
YDGDYEHFTAAKSTLVNGVIQLAGECAEHLQDPAMVREWVLERVQGFEQLPYVAGAKKNP
TQAAGELAAMLRTRASVADMVVRYQEAKRQRGVLDFGDLVALAARIARDIPLAAATERAR
YKVVLLDEFQDTSHAQLVLFSRLFGQCHAVTAVGDPNQSIYGFRGASAGQLFHFVQEFPV
VHKAAGEDSTSYAVAPTSYLTTAWRNGRNILQAANTIAAPLNRAAGAGAAAGEKTDSGTV
SVPPLVPSPAAVDGSVVIGRFGTDEDEAAAIVRDVRRYQRTVFEEEADGTPTKPTMAVLC
RRRAQMECLRREFELQGIAYEIVGLGGLLDTPEVVDVVATLRVLADPGRSDALMRLLAGA
RWRIGPADLMAFSDWSRFLARRRSAPDAQGEASETDEEASAVVVESDITDAASLVEALDY
LPKPGWTSGHGRSLSGAALDRLNTLAAELRSLRSFIGDDLTTLLGEVERAMLLDIEVAAK
PGVSIHQARRNLDAFQDAAANFLQTSQRIDLLAFLSWLEAAASEEGGLDVAPPETNREAV
QLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAAALPWPLRGDRADLPQWDLDQS
DQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVLWASSAAWNGSRSGIAGMSAFL
SELAPLAGLGQEDDGRFGIAAQADVHPDSVSEEALPDTSPLTTSLEIAQFPYDPLEGPSD
PRTGARLRLAPGRREAMDRAAAMVRAYMENPDNEHSSPPLGGAAGKWSQEAELLLDRQRR
RKAIHDIHLPSHISASLFVDLGDNPAAVLSQLRRPVPREPGISARKGTAFHAWVEEYFGT
TGMLDLDEAPGSDSHIDEAYGLDDMVAAFRQSEWAQRAPAFVEVPVETRIGDVVVRGRID
AVFRDADGRWQLIDWKTGRRPAGRQLATRAVQLAVYRLAWARLKDVPLEEVSAAFYYVAE
DAVVRPHDLGSAEELEQIVAEALKAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgaactcctggacggtgtgggggcctccacattcgatggcggcgcgggtacc
ccggagccccgttttacgccgtcgcagctggcggacatcctgggcgagaagaaccacccc
acgtccgaacagtcggacatcatttcttccgcactgacgccgcgtctggtcattgccgga
gcgggttccggaaagaccgccaccatggccgaccgtgtggtgtggcttgtcgccaacggc
tgggtccgcccggaagaggtcctgggcgtgacgttcacccgcaaggctgctggagaactg
gccagtcgaatcaggagcaagctggccacactccagcgggtggccgccgaagacgatggc
accatcggattcccggcggacctgctcggcgctgatgatctggagcccagggtttccact
taccattcgtacgccagcgcaattgtgtccgactacggcctgcggttggggatagagcgt
gatgtcgtcctgctgggtggcgcgcagtcctggcagttggccagcgaagtcgtagaggcc
tacgacggcgactatgagcacttcacagccgcaaagtcgacgttggtcaacggtgtcatc
cagttggcaggtgaatgcgccgagcatctccaggacccggccatggtgcgtgaatgggtg
ctcgaacgggtgcagggattcgaacagcttccctatgtggccggagctaagaagaacccg
acacaggccgccggggaactggcggcgatgctccggacccgggccagcgtggctgacatg
gtggtccgataccaggaagccaagcgccagcgcggggtcctggacttcggggacctggtg
gctctggctgcccggattgcgcgggacatccctttggcagctgccacggaacgcgcgcgg
tacaaggtggttctcctggacgagttccaggacacctcgcacgcccagttggttctgttt
tcgcggctcttcggccagtgccacgccgtcaccgctgtcggtgaccccaaccagtccatc
tacggattccggggcgcttcggccggtcagctcttccatttcgtgcaggagttcccggtc
gttcacaaggccgcaggggaagattcgacgtcgtacgccgtggcacctacgtcctacctg
accactgcctggcggaacggaaggaacatcctgcaggcagccaataccatcgccgcgccc
ttgaacagggctgcgggcgccggcgcagcggcgggggagaaaacggactccgggaccgtt
tccgtcccgccgctggtacccagtcctgccgctgttgacggcagcgtggtcatcgggcgg
ttcggaactgatgaggacgaggctgccgcgatcgtccgcgatgtccggcgttaccagcgg
actgtgttcgaagaagaggccgacggtacaccgactaaaccgaccatggcggttttgtgc
cgccggcgcgcccagatggagtgcctccgccgcgagttcgaactgcagggaatcgcttac
gagatcgtcggcttgggcggactgctggacaccccggaggtcgtggatgttgtggctacc
ctgcgcgtcctggctgatccaggacgttctgatgccctgatgaggttgcttgccggggca
cgctggcggattggtccggcggacctgatggctttcagcgactggtccaggttcctcgcc
cggcgtcggtccgccccggacgcacaaggtgaagcgagcgaaaccgacgaggaagcatcg
gccgtggtggtggaaagcgatatcaccgacgccgccagcctggtggaggctcttgactac
ctgcccaagccggggtggacttccggccatggaaggagcttgagcggtgcggccttggat
cgcctgaacacccttgccgcggaactgcgctccctgaggagtttcatcggcgatgacctc
accacgctgctgggcgaggtggagcgggccatgctcctcgacatcgaagttgccgccaag
ccgggggtcagcattcatcaggcgcgacgaaacctggatgccttccaggacgccgcggcg
aacttcctccagacctcgcagcggatcgaccttctggccttcctgtcctggctggaggca
gccgcctccgaggaaggcggtctggacgtcgcaccgccggagaccaaccgcgaagccgtg
cagttgctgaccgtccacgcctccaagggcctggaatgggacgtggtcttcgtacccggc
ctcaacgcaggttcgttccccagcaacagggactcccggtggagcaccggcgccgcggca
ttgccgtggcccctgcgcggagatcgcgccgaccttcctcagtgggaccttgaccagtcc
gaccagaagggctggctggatgcagagaaggacttcaaatcggaagtccaacaccatggt
gaagctgaggagcgccgccttgcctacgttgcttacacgcgggcaaagttcgtcctatgg
gcctcaagcgcagcgtggaatggttcgcgctcggggatagccgggatgtccgccttcctt
tcggagctggcgccgcttgccgggctggggcaggaagacgacggacgttttggcattgcc
gcgcaggccgacgtccaccctgattccgtgtcagaagaagccttgcccgacaccagccct
ttgacgacttcgctggagatagctcaatttccctacgatcctcttgaaggaccgtccgac
ccgaggaccggagcccgcctcaggctggcgcctggccgtcgggaggccatggaccgggcc
gcagcaatggtgcgggcatacatggaaaatcccgacaacgaacattcctcgccccccttg
ggcggtgcggccggaaagtggtcgcaggaagctgagctcttgctggaccggcaaaggcga
cggaaggcaatccacgacatccatctgcccagccatatctccgcgtcacttttcgtggac
ctcggcgacaaccctgcggccgtactgtcccagctccgcaggcctgttccccgggaaccg
ggaatctcggcgcgcaagggtacagcgttccacgcctgggtggaggagtacttcggtacg
acaggaatgctggacctcgacgaggcacccggctcggactcgcacattgatgaggcctat
gggctggatgacatggtggctgcgttcaggcagtccgagtgggcgcagcgtgctccggcc
ttcgtggaggtgcccgtggaaacccgtatcggtgacgtggttgtccgcggcaggatcgat
gccgtgttccgtgacgccgatggccggtggcagttgattgactggaaaaccggacgacgt
ccggcaggaagacaactggcaacgcgcgcggtgcagctggccgtgtaccggctggcgtgg
gcgcggctcaaggacgtgcccctggaggaagtcagcgcagcgttctactacgtggccgaa
gacgcagtggtgcgcccgcatgatctgggcagcgccgaggaacttgaacagatcgttgcc
gaggccttgaaagccaagtga
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