Paenarthrobacter nicotinovorans: JMY29_14560
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Entry
JMY29_14560 CDS
T08055
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnv
Paenarthrobacter nicotinovorans
Pathway
pnv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMY29_14560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnv03019
]
JMY29_14560
03009 Ribosome biogenesis [BR:
pnv03009
]
JMY29_14560
Enzymes [BR:
pnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JMY29_14560
Messenger RNA biogenesis [BR:
pnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JMY29_14560
Ribosome biogenesis [BR:
pnv03009
]
Prokaryotic type
rRNA helicases
JMY29_14560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKF02970
LinkDB
All DBs
Position
complement(3124961..3127147)
Genome browser
AA seq
728 aa
AA seq
DB search
MTENLNENFDARNTDSAETAEVTAPAEAEAPAAAAAPVETAAAESAAPAFTEAPAPKAEE
TEAPAPKAEEEEEEGVKFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLA
QTGTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDF
TVLPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRM
GFADDVEQIFQQTPESRQVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRY
LQVMGPHKLDALTRILEVEDFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQR
ERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGD
AILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAAFR
DLIASYEEEHNVPASEIAAALAVMAQGGQPLLVKELPAAPEYQKRERSKDGFGSRGPTRA
LTEGNATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQ
LRALSRTRIGGELIHLELDNGRRPNSERGGYSGGGRGGYGDRENRGGGNFKGNGGFKKEF
RKSDGERSSADRGGRSYSDRTERTAGSYGDRDRGQASGSRFGGHGDGARKPRTGGEGSNR
DFNRKGKW
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaatctcaacgaaaacttcgacgcacggaacaccgactccgctgaaacagca
gaggtcaccgcacccgccgaagctgaagcaccggctgctgccgctgcccccgtcgagact
gccgcagctgagtctgcagcccccgccttcaccgaagctcctgcccccaaggcagaagag
accgaagctcctgcccccaaggcagaagaagaggaagaagaaggcgttaagttcgtcgat
ctgggtatcgatggccgcgttctggccgccctgcaggatgtcggctacgaaaagccgtcc
cccatccaggcagccaccatccccctgctgcttgaaggccgcgacgtcgtcggtctcgcc
cagaccggtaccggcaagaccgcagctttcgctgttcctgccctttcccgtctggccgaa
ctccacgacctcaacggcccgtcccgcaagacccaggccctggtcctggctcctacgcgt
gaactggccctgcaggttgccgaggcgttcacttcctacgccaagcacattgatgacttc
acggtcctcccggtgtacggtggctcggcttacggcccccagctcgccggcctgcgccgc
ggtgcccaggttgttgtcggtacccccggccgcgtgatcgaccacatcgccaagggttcg
ctggacctctccgagcttcagtaccttgttcttgacgaagctgacgaaatgctgcgcatg
ggcttcgccgatgacgtggagcagatcttccagcagaccccggagagccgccaggttgcc
ctgttctctgccaccatgccgggccagatccgccgcatgtccaagcagtacctgaacaac
cctgccgaaatctccgtgaagtcgaagaccaccacgggtgccaacaccaagcagcgttac
ctgcaggtcatgggcccgcacaagctggacgccctgacccgcatccttgaggttgaagac
ttcgacggcgtcatcgccttcgtgcgcaccaagatggctaccgaggacctcgccgacaag
ctgaagtcccgtggcttccaggctgccgccatcaacggcgacatcccgcagcagcagcgc
gaacgcactgttgacgcgctcaaggaaggccgtatcgacatcctggtggctaccgacgtc
gcggcccgtggccttgacgttgagcgcatcagccacgtcatcaactacgacatcccccac
gacaccgagtcctacgtgcaccgcatcggccgcaccggccgtgcaggccgttccggtgac
gcgatcctcttcatgacgccgcgtgagaagtacttgctgcgttccatcgaaaaggccacc
cgccagccggtggagcagatgcacctgccgaccgcggagaccgtgaacacgcttcgcctg
ggcaagttcgcagagcgcatcaccgagacgctcgcgtccgaggatgttgctgcgtttcgc
gacctcatcgcctcctacgaggaagagcacaacgttccggcttcggagattgcagccgcc
ctggccgtcatggcgcagggtggacagcccttgctggtcaaggaactgcccgcagctccg
gagtaccagaagcgcgagcgctccaaggacggcttcggttcccgtggcccgacccgtgcg
ctcaccgagggcaacgcaacctaccggatcgccgtcggacgccgccagcgcgtcatgccg
ggctccatcgtgggtgccattgccaacgaaggcggcatttcctccgcacagatcggtggc
atcgacatccgctcggaccactccctggtggagctcccggcagacctgagccccgagcag
ttgcgcgcactgtcccgcacccgcatcggtggcgagctgatccaccttgagctggataac
ggccgcaggcccaacagcgagcgtggcggctactccggtggcggacgcggcggctacggc
gaccgtgaaaaccgcggaggcggcaacttcaagggcaacggcggattcaagaaggaattc
cgcaagtccgacggcgagcgttcctccgctgaccgtggcggccgctcctacagcgaccgc
accgagcgcacggcaggcagctacggcgaccgcgaccgcggccaggccagcggctcacgc
ttcggtggtcacggtgacggtgcccgcaagccccgcacgggtggcgaaggcagcaaccgc
gacttcaaccgcaagggcaagtggtaa
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