Pseudodesulfovibrio nedwellii: SYK_00390
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Entry
SYK_00390 CDS
T09024
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYK_00390 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnw03019
]
SYK_00390 (pnp)
03016 Transfer RNA biogenesis [BR:
pnw03016
]
SYK_00390 (pnp)
Enzymes [BR:
pnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SYK_00390 (pnp)
Messenger RNA biogenesis [BR:
pnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SYK_00390 (pnp)
Transfer RNA biogenesis [BR:
pnw03016
]
Prokaryotic type
tRNA degradation factors
SYK_00390 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BDQ35679
UniProt:
A0ABM8AW39
LinkDB
All DBs
Position
complement(39811..42045)
Genome browser
AA seq
744 aa
AA seq
DB search
MTMIPFDATSLTATVGGMDITIETGKYARQASGAVTITSGKTTVLVTAVTQPLAIDRGFF
PLTCNYQEMAYAAGRVPGNYFRREGRPSERETLICRLIDRPIRPLFEKGFADEVQIIATV
LSADKHVNPDVLAVTGASAACHISKMPFLGPIVGARVGFINNEFVLNPSYTQADNESSLN
LVFAATREAMVMVEGGGKFVSEDLVADALAWGHEQVAPLFDLQDQLREKVGVAKLKVETP
KQDEELVSFLGDFITDDIQAAVTTPEKMVRYAAKDAAKAKAKEAVAEKFPEDEAKLKAVS
GIVGDITKKLVRDRIVNEGLRIDGRDTTTVRPLSIETGVLSQTHGSVLFRRGETSALAVA
TLGSTRDEQRYDSLLGDATKRFMLHYNFPPYCVGEARMLRGTSRREVGHGALAERALTPV
LPNQDDFPFTIRVVSEIMESNGSSSMASVCGATLSLMDAGVPISEPVAGIAMGLCKEDDK
YFVLTDILGDEDALGDMDFKVAGTKDGITAIQMDIKIAGIPQEVLKKALHQAKDARLHIL
GHMGEELAAPREELSELAPQMAVVHIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGK
ISIFAPTMVSMEKAKEMVLYYDQKAEPGKNYLGTVRKVLEVGALVEILPGMEGMLHISQL
DFERVERVEDVVQLGQEVWVKCISLEPGGRIRLSRKAWLMEEAGQEVNLEDFKRPAPRGG
DRNGGRRDNRGGGGRRDNRGGGRR
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgattccttttgatgccacaagcctgaccgcgacggtcggcggcatggacatc
acaatcgaaaccggcaagtatgcccgccaagccagtggcgccgtgacgattacgtccggc
aaaaccactgttctggtcaccgccgtgacccagcccctggctattgatcgcggcttcttc
cctctcacctgcaactatcaagaaatggcgtatgctgctggtcgtgtgccaggcaactac
ttccgtcgtgaaggccgcccgtccgagcgtgagactctgatctgccgcctcatcgaccgc
cccatccgccccttgtttgagaaaggcttcgctgacgaagtccagatcattgccacggtt
ctgtccgctgacaaacatgtcaacccggacgtcctggccgtgactggtgcctctgcagcc
tgccatatctccaagatgcctttccttggccccattgtgggagctcgcgttggattcatc
aacaacgagtttgttctcaacccctcctacacacaggcagacaacgagtcctccctgaac
ctcgttttcgcggccacccgcgaagccatggtcatggttgaaggtggcggcaagttcgtc
tccgaagaccttgttgccgatgctctggcttggggccacgaacaagtcgctccgctcttc
gacctgcaggatcagctccgcgaaaaggtcggcgttgccaagcttaaagtcgaaacaccc
aagcaggacgaagaactcgtttccttccttggtgacttcatcactgatgatattcaggcc
gcagtgaccactcccgaaaagatggttcgctacgctgccaaagatgctgccaaagcaaaa
gccaaagaggctgtcgctgagaaattccccgaagacgaagcaaaactcaaagctgtcagc
ggcattgtcggtgacatcactaaaaagctcgtgcgcgatcgcatcgtcaacgaaggtttg
cgtatcgacggtcgtgacaccaccaccgttcgtccgctctccatcgagaccggtgtacta
agccagactcacggttccgtactgttccgccgcggtgaaacttccgcactggctgttgcc
actctcggctccacccgtgatgagcagcgttacgactctctgctcggcgatgccaccaag
cgcttcatgctgcattacaacttcccgccgtactgcgtcggtgaagcccgtatgctgcgt
ggtacctcccgccgtgaagtcggtcacggtgcactcgcagagcgcgccctgactccggtt
ctgccgaaccaggacgacttcccgttcaccatccgtgtggtctccgagatcatggaatcc
aacggttcctcctccatggcctctgtttgcggcgccactctgtccctcatggacgctggt
gttcccatttccgagccggttgccggtatcgccatgggcctgtgcaaagaagacgacaaa
tacttcgtactcaccgacatcctcggtgatgaagacgcactgggcgatatggacttcaag
gtcgccggtaccaaggacggcatcactgccatccagatggacatcaagatcgccggtatc
cctcaggaagtactgaaaaaggcccttcatcaggccaaagacgctcgtctgcatatcctc
ggtcacatgggtgaagagctggcagctcctcgtgaagagctgtccgaactggctccgcag
atggctgtcgtgcacatcgatcccgaaaaaattcgctcggtcatcggacccggcggcaaa
aatatcaaagccattaccgctgagaccgaagccgatatcgacatcgaagattccggtaaa
atctccatcttcgccccgaccatggtatccatggaaaaggccaaggaaatggttctctac
tacgaccaaaaggccgaacctggtaagaactacctcggtactgtccgtaaagttctggaa
gtcggcgcactcgtcgaaatcctgcccggtatggaaggcatgttgcacatctcccagctc
gacttcgagcgcgtcgaacgcgtcgaagacgtcgtccagctcggacaggaagtctgggtc
aagtgcatctcccttgagcccggtggacgcattcgtctgtcccgcaaggcatggctgatg
gaagaagccggccaggaagtaaacctggaagacttcaagcgccctgcaccgcgtggcggt
gaccgcaatggtggtcgtcgtgacaaccgtggtggcggcggacgccgtgacaaccgtggt
ggcggacgtcgctaa
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