Pseudodesulfovibrio nedwellii: SYK_00410
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Entry
SYK_00410 CDS
T09024
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnw03016
]
SYK_00410 (truB)
Enzymes [BR:
pnw01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SYK_00410 (truB)
Transfer RNA biogenesis [BR:
pnw03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SYK_00410 (truB)
Prokaryotic type
SYK_00410 (truB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
BDQ35681
UniProt:
A0ABM8AWN1
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All DBs
Position
complement(42621..43562)
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AA seq
313 aa
AA seq
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MGRRQKKRSPEQRDGLLILNKPSGPTSTGCLNDIKHQLKQYKIGHGGTLDPMAQGVLLVL
LGHGTKLAPYLSGGTKTYSGTFRLGITTDTLDIQGEVTKETPVDVTVEDVKREILYWKEL
TEQEVPAYSAAKHKGKPLYALAREGKETPVKIKPIVISHVEALDVQMPEASFRVSCSAGT
YIRSLVHSLGTRMGCGATLISLVRESSEPFRLDQALDLEDVLENPDSFPDRVTPLKDTLP
HWSRYQLTEPLAGLVKNGAWLPVNDQPGELLAGELGDRAMLLDTDDTPLALVEAKLQDNK
PKWSILRGLWNQD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtagacaaaaaaaaagaagccccgaacaacgtgatggactgctgattttaaat
aaaccatccggccctacttcgaccggctgcttgaatgatatcaaacatcaactcaagcag
tacaaaattggtcatggcggaacacttgatcccatggcccaaggagtacttctggttctt
ctcggacacggcaccaagcttgctccgtacctcagtggcggaaccaaaacatattccggc
acatttcgactcggaataaccactgatacccttgatattcaaggggaagtaaccaaagaa
acacctgttgacgtcactgtcgaagacgtcaaacgcgaaattttatattggaaagagttg
acagagcaggaagttcctgcctattcggctgccaaacacaagggtaagccgttgtatgcc
ctagcccgtgagggtaaggaaacaccggtcaaaattaagcccattgttatttctcatgtg
gaagcgctagacgttcagatgcctgaagcatcattcagggtcagttgctccgccggtact
tatatacgttccctggtccacagcttggggacacgaatggggtgcggcgcgacactgatc
agcctggtccgggaatcgagcgagcctttccggctcgatcaagcccttgaccttgaagac
gttctggaaaatccggattcatttccggacagagtgacccctttaaaggacactctacct
cactggtctcggtatcaattgaccgaaccgttggcaggactcgtaaaaaacggggcctgg
ctaccggtcaatgatcaaccgggcgaactgctggccggggaacttggtgatagagccatg
ttgctcgacaccgacgatactccgctggcacttgttgaggcaaaactccaggacaataaa
cccaagtggtcaattcttcgaggactttggaaccaagactga
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