Pseudodesulfovibrio nedwellii: SYK_00740
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Entry
SYK_00740 CDS
T09024
Symbol
rocR
Name
(GenBank) arginine utilization regulatory protein
KO
K06714
arginine utilization regulatory protein
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnw03000
]
SYK_00740 (rocR)
Transcription factors [BR:
pnw03000
]
Prokaryotic type
Helix-turn-helix
Other families
SYK_00740 (rocR)
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
PAS
PAS_9
HTH_8
AAA_2
AAA
AAA_16
Mg_chelatase
PAS_4
AAA_7
NB-ARC
Bac_DnaA
AAA_3
AAA_22
TTC3_9th
Motif
Other DBs
NCBI-ProteinID:
BDQ35714
LinkDB
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Position
77981..79534
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AA seq
517 aa
AA seq
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MKPAAIHDLFPNIDPGSVPFLAILDQFYMGVVITDTVGKILYFNDVQARIDNLDPNDVIG
QKVMDYYRVDDDVTPIMKCVESGEIVDNFACYYRTRLGKIVNSIHNVYPLYSHETLIGTI
CFVRDYSITRETFETISQPHASRELRTFNIPATPAKSRDLGNGTRFSFKDIIGKSSEFVK
AVESARTASNSPSSIMLYGETGTGKELLAQSIHNKSARKDKPFTAINCAAIPEHLLEGIL
FGTAKGAFTGAMDKQGLFEQADGGTLFLDEINSMSIGLQAKLLRVVQERKVRRVGSLKET
DMDIRIISSVNEDPHQAAERGALRYDLLYRLGVLIIRIPPLRERMGDLEKLIRHFLYKYS
VLLDRNINAISADVMDIFHNYYWAGNVRELEHVIEGAVNLVTDGEAITIQHLPTHISKTI
VSPSNEVVSPSRQTGRRDVSPANSLNVVFPTDSSVTACPQDKSLAKIQAENESQTIREML
TFYQGNVSRSARKLGLSPQLLNYKMKKHDIRRSDFLV
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagctgcaatacacgatttgttcccgaatattgaccccggctccgttcctttt
cttgccatcctcgaccagttttatatgggagtggttataacggatactgtcggcaagatt
ttgtatttcaacgatgttcaggcgcgtatcgataatcttgatccgaatgatgtgatcgga
caaaaggttatggactattaccgcgtggatgatgacgttactcccattatgaaatgtgtt
gaatccggggagattgtcgataactttgcctgttattaccgcacaagattagggaagata
gttaattccatacacaatgtttatcctctgtattcccatgaaacattgatcggtacgatt
tgtttcgtgagagattacagcattactcgggagactttcgaaactatttcccaacctcac
gcaagccgagaactacggacttttaatattccggccactcccgccaagagtcgtgatctg
ggaaatggaacacgattttcgtttaaggatatcattggaaagtcctcagaatttgtcaaa
gcagtggagtctgcccgtacggcgtcgaattcgccttcttccatcatgctctacggcgaa
accggtaccgggaaagagcttttggctcagtccattcacaacaaaagcgcgagaaaagac
aagccgttcaccgcgatcaattgtgcggctattcccgagcatttgttggaaggaattctc
tttggcactgccaaaggtgcttttaccggagccatggataagcaagggctattcgaacag
gccgatggcggcacgttgtttcttgatgagataaactcaatgtccatcggattgcaggcc
aagttgttgagggtggttcaagagcgaaaggtgcgccgtgttggttctttgaaagaaacc
gacatggatatcaggatcataagttcagtgaatgaggaccctcatcaagccgcagaaaga
ggggctcttcgatacgatctactctaccgcctaggcgttttgattattcgaattcctcct
cttcgggagcggatgggtgatcttgaaaaattgattcgtcatttcttgtacaaatatagc
gttcttctcgatagaaatattaacgctatatcagccgatgtgatggatatatttcataac
tactattgggccggcaatgttcgagaattagaacatgtcattgaaggagcggtaaatttg
gtcacagatggcgaagctattaccattcaacatttgccaactcatatttctaaaacgatc
gtttctccatctaacgaagtcgtgtctccttctcgtcagactgggaggagggacgttagc
cccgccaattcactcaatgttgttttcccgacagattcttcggttacagcatgcccgcaa
gataagtctctggcgaaaattcaagctgaaaatgagagccaaacaattcgtgagatgttg
acattctatcaagggaatgtttcacgatccgccagaaagcttggactttctcctcaactg
ctcaattacaagatgaaaaaacacgacattcgcagaagcgattttcttgtgtaa
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