Pseudodesulfovibrio nedwellii: SYK_01100
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Entry
SYK_01100 CDS
T09024
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K06714
arginine utilization regulatory protein
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnw03000
]
SYK_01100
Transcription factors [BR:
pnw03000
]
Prokaryotic type
Helix-turn-helix
Other families
SYK_01100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BDQ35750
LinkDB
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Position
125023..126519
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AA seq
498 aa
AA seq
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MYFDEKKFLNVSRESVLTPSMKAIWDDMGLGVAVVDANGICEYMNPIQSQVDGFGRIPVV
GQHITSLYVPHELECIPTMECLQKGRPLLKKSYFYKTTNNYLASTVSDFFPLFDNGKKDG
VIAFTIWTGTTSLVKRQRRPAKAIVPGRSSYEYYTFDSLVGKDDALIEVLNEARTAALAP
SPVMIWGESGTGKELFAQAIHAASDRCDHSLVPVNCAAIPENLLEGILFGTAKGAYTDAA
DKPGLFEEADGGTLLLDELNSMPMGLQAKLLRVLQEKRVRRLGSRTEIPVDVRVISILNV
DPLYAVEQNILRRDLFYRLAVVGLAVPSLSQRKQDIPLLARTFIDRSEQRKGMRAISIDE
DVLRMFSDYEWPGNIRELLHVIEGSLALIGDRLSIDWGCLPRHFRDACRNAAAPRITEPL
LSESGVKQSVEKAFYDYHAVKRSSVIPLKGCVQEYEAECIRNVLRVTGGNVAKAARIMEI
TGAGLRYKIKQLNIEEED
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtattttgacgaaaaaaagttccttaatgtcagtcgtgaaagcgttttgacaccttcc
atgaaagccatctgggatgatatgggacttggggtcgccgttgtagatgccaatggcatt
tgcgaatacatgaatcccattcagagtcaggtggacggttttggacggatacctgtggtt
gggcaacacataacaagtctttatgtgccacacgagttggagtgtattcccaccatggaa
tgtctacagaaggggcgaccgcttctcaagaagagttatttttacaagacgacaaataat
tatcttgccagcacggtttctgatttctttccgctgtttgataacggaaaaaaggatggc
gtcattgcctttactatttggaccggcacgacgtcactggtgaagagacaaaggcgtcct
gccaaggcgattgttcctgggcgaagctcttatgaatattatacattcgacagtttggtc
gggaaagatgatgccctgattgaagtgctgaacgaagcacggacggcagcactggcgccg
tctccagtgatgatttggggagaaagtggcacgggtaaggaattgtttgcccaggctatt
catgccgcgagtgatcggtgcgaccattctcttgtcccggtgaactgtgctgccatccct
gaaaatttgttggagggtattctttttggcacggccaagggcgcatatactgatgctgct
gacaagccggggctttttgaagaagccgatggcggaacattgcttcttgatgagttgaat
tccatgcccatgggattgcaagccaaactccttcgagtgctccaggaaaaacgtgtgcgt
cggcttgggtcgcgtacagaaataccagtggacgtgcgagttattagtattttgaacgtc
gatcctctctacgccgtggagcagaatatattgcggcgagatttgttttatcgccttgct
gtcgtggggcttgccgtgccgtccttgagtcaacgtaagcaggatattccgttgttggcg
cgaaccttcattgaccgttccgaacagcgaaagggaatgagagcgatcagcattgatgaa
gatgttcttcgtatgtttagcgattatgaatggccgggaaatatccgcgagttgctgcat
gttattgagggaagtctcgctttgattggagatcgtctttcaatcgattgggggtgcctc
ccgcgtcattttcgagatgcttgcagaaatgcagccgcaccgcgaattaccgagcctttg
ctctctgaatctggggtgaagcagtcggtggagaaggctttttatgattatcatgccgtt
aaaaggagtagtgtgattccactcaaggggtgtgtgcaagagtatgaggcagaatgtatc
cgtaatgtgttgcgggtaacaggcggtaatgtggccaaggccgcacggattatggagatc
acaggtgctggtttacggtacaagataaagcagctcaatattgaagaagaggattag
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