KEGG   Pseudodesulfovibrio nedwellii: SYK_03710
Entry
SYK_03710         CDS       T09024                                 
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
  KO
K03702  excinuclease ABC subunit B
Organism
pnw  Pseudodesulfovibrio nedwellii
Pathway
pnw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pnw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SYK_03710 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnw03400]
    SYK_03710 (uvrB)
DNA repair and recombination proteins [BR:pnw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SYK_03710 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SYK_03710 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 P-loop_SecA AAA_16 AIRS nSTAND_NTPase5 SLFN-g3_helicase
Other DBs
NCBI-ProteinID: BDQ36011
UniProt: A0ABM8AXH9
LinkDB
Position
408033..410036
AA seq 667 aa
MPDFKLVSEYTLKGDQPEAVAELVNGLQSGVRDQVLLGATGTGKTFAMANVVATLNRSAL
ILAPNKTLAAQLYTEFRGLFPDNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDNIDK
LRHAATHALLTRKDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQTMAMESLLGRLVEIHY
ERNDYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIDSISETDPLTGEVKDRLRKT
VIYPGSHFVSDRDNLDRATHDIREELRLRLTDLKKHNKLVEAQRLEQRTMYDLETIEELG
YCNGIENYSLHLDGRHEGQPPATLLDYFPDDFILFVDESHIALPQVGGMFKGDRSRKTTL
VDFGFRLPSALDNRPLNYEEFQERIKQAVYVSATPGPLEIDLAHGVVVEQIIRPTGLVDP
EIEVRKTHGQIDDLLSECKKRQSRDERVLVTTLTKRMAEDLNDYLNQMGVESKYLHSDID
TLERMAIIQALRAGEFSVLVGINLLREGLDIPEVSMVAILDADKEGFLRSARSLIQIFGR
AARNVDGRVILYADKITDSMASAMDETDRRRQKQQEYNEVHGITPTTIRKKVDNLFGELS
GVTMGHTSVGMAAEDLAQYGADPKALQKSIKRLEREMREAAKELEFERAAELRDRVAMLR
ERFLELG
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgcctgattttaaacttgtcagtgaatataccctcaaaggtgatcagccggaagctgtc
gcagaactggtcaacggtctgcaaagtggcgtgcgagatcaagttttgcttggtgccacc
ggcacaggcaagacctttgccatggcaaatgtggtggcgacgcttaaccgttctgcgtta
attctggctccaaacaagactttggctgcacagctctacacggagtttcgtggtttgttt
cctgacaatgccgtcgaatatttcgtcagttattacgactattatcagccggaagcttac
ctgccgcactcggatgtatacattgagaaggattcatccatcaatgacaacatcgataaa
ttgcgtcatgcagccactcatgctctgttaacgcgtaaagatgtgcttatcgttgcgtcg
gtttcctgtatttatggtcttggttcacctgatttctatgccaagatggttattcccgtg
gaagaaggacagaccatggctatggagtcgctccttggacgcttggttgagattcactat
gagcgtaatgattacgatttccatcgtggtacattccgtgtccgtggagatgtggtggaa
attatccccgcatacagtcgggaaaaggcgttgcgtatagagttctttggtgatgaaatt
gattctatttccgaaacggatccgctgacgggtgaggttaaggatcgtctgagaaagacg
gttatttatccgggcagtcattttgtttcagaccgggacaatctggatcgggctacacat
gatattcgggaagaacttcggcttcggttgactgatctcaagaagcataacaagttggtc
gaggcgcaaagacttgaacagcgtaccatgtacgacctcgaaacaattgaggaactcgga
tattgtaacggtatagaaaattattcccttcatttggatggacgacatgaggggcagccg
ccagccactttgctcgactatttcccggatgatttcattttgtttgtggacgaatcccat
attgctttgccgcaggtgggcggcatgtttaagggtgaccgttcgcgaaagactacattg
gttgattttgggttcagattaccgtccgcattagacaatcgtccgcttaattatgaagaa
tttcaagagcgtatcaaacaggccgtgtatgtctcggccacgccgggaccattggaaatt
gacttggctcatggtgtggtggtggaacagattattcggcctacaggccttgtcgaccca
gagattgaagttcgaaaaacacacggacagattgacgatttgctgtcagagtgtaagaaa
agacaatcaagggacgagcgggttctggttactacgctgaccaagcgcatggccgaggat
ctgaacgattatttgaaccagatgggggtcgaatccaagtacctgcattcggatattgat
acccttgaacggatggccatcattcaggctcttcgggccggtgaattttctgttcttgtg
ggtatcaatttgcttcgagaaggattggatatcccggaagtttccatggtggcgattctt
gatgctgacaaggaaggttttttacgttcggcacgttcgctcattcagatttttggacga
gctgcgagaaatgttgacggcagggttattctttatgcggataaaattacggattccatg
gcctcagctatggatgaaacagaccgaagacgccagaaacagcaggaatacaacgaagta
cacggtattacgccgaccactattcgcaagaaggtagataacctgtttggtgaattgagc
ggtgtgaccatggggcatacttcggtagggatggctgccgaggatttggcacaatatggg
gcagatccgaaagctttgcagaagagtatcaagcggttggagcgtgaaatgcgcgaagct
gcaaaagaattggaatttgagcgggctgcggaactcagggaccgtgttgccatgcttcgt
gagagattccttgagttggggtaa

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