Pseudodesulfovibrio nedwellii: SYK_06320
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Entry
SYK_06320 CDS
T09024
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnw03032
]
SYK_06320
03036 Chromosome and associated proteins [BR:
pnw03036
]
SYK_06320
03400 DNA repair and recombination proteins [BR:
pnw03400
]
SYK_06320
DNA replication proteins [BR:
pnw03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SYK_06320
Chromosome and associated proteins [BR:
pnw03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
SYK_06320
DNA repair and recombination proteins [BR:
pnw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
SYK_06320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_2
HU-HIG
HU-CCDC81_euk_1
DUF5666
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
BDQ36272
LinkDB
All DBs
Position
683165..683440
Genome browser
AA seq
91 aa
AA seq
DB search
MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALRRGDRVEIRGFGSFKIKDYEGYTG
RNPKTGTVVQVKPKKLPFFRPGKELKEFINQ
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagcgaattgatcaaggctctgtccgaacaaaagaaaatgcacgttgacgag
gccaccaaagtggtcggagctttcgtcgattccgtcaaggaagcccttcgtcgcggcgac
cgtgtcgaaatcagaggttttggcagctttaaaatcaaagactacgaaggttacaccgga
cgcaatcccaagactgggacagttgttcaggttaaacccaaaaaacttcccttcttccgt
cctggtaaagaattgaaagaattcatcaaccagtag
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integrated database retrieval system
