Pseudodesulfovibrio nedwellii: SYK_07240
Help
Entry
SYK_07240 CDS
T09024
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYK_07240 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnw03019
]
SYK_07240 (rhlE-2)
Enzymes [BR:
pnw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYK_07240 (rhlE-2)
Messenger RNA biogenesis [BR:
pnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYK_07240 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDQ36364
UniProt:
A0ABN6RZG5
LinkDB
All DBs
Position
757055..758290
Genome browser
AA seq
411 aa
AA seq
DB search
MAFSSFSFDNRLNAGIKSCGYETPTPIQTQAIPHVLKGYDVMGLAQTGTGKTAAFALPTL
QRLLDERLPAKGAPKILVLAPTRELALQIHESFIALGKQTGIRSAAVIGGVGMSPQVKAF
AHSRIIVACPGRLVRLMKMNAISLNQINTLVLDEADRMLDMGFMPDIKRILAKLPVKRQN
LLFSATMPADIRKLAEKILNQPKTVQVANTVSVKSVGHIQYKAPNHLKLSLLGKVLAATD
HKSVLIFTRTKHKAKNLARKLSNGGENCTFLQGNMSQGQRQRALDGFRNGQFNIMVATDI
AARGIDCDRISHVINFDMPDTVENYTHRIGRTGRAGRSGTAVSFVTPEERSQIKDIERVM
RIKIEQDTIDGFDHNAVSTKIDTRKPSRRPPKNRFSNSRKRSSNRGRRSAA
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcctctttttcttttgataaccgtcttaatgcgggcatcaaatcatgcggc
tatgaaaccccgacccctatccagactcaggcaatccctcacgtactcaaagggtacgat
gtcatgggattggcccaaactggcacaggtaagaccgctgcgtttgccctgcctactctg
caacgtttgctggacgaaaggctgcccgccaaaggtgcacccaaaattctggttctcgct
ccgactcgtgagctggcattgcagattcacgaaagcttcatcgctctgggtaaacaaacc
ggtattcgcagtgctgccgtcataggcggcgtgggcatgagtcctcaggtcaaggccttc
gcccattcacggatcatcgtggcttgtccgggtcgattggtacgtctcatgaaaatgaac
gctatcagccttaatcaaatcaacacattggttctcgacgaagcagaccggatgctcgat
atggggttcatgcccgacatcaaacgcatcttggccaaactgcctgtcaaacggcagaat
ctgctcttttccgccacgatgcccgccgatatcagaaagctcgcagagaaaattctcaac
cagcccaaaaccgttcaggtcgccaacacggtctcggtaaaaagcgttggacatattcag
tacaaggcgcccaaccatctcaaactttccctgttgggaaaagttctcgctgcaactgac
cataaaagcgtactcatctttacccgcacaaagcacaaggcaaagaatctggcgcgcaag
ctcagtaacggtggagaaaactgcactttccttcaaggcaatatgagccagggacaacgc
caaagagctttggacggatttcgcaacgggcagttcaacattatggtagccaccgacatc
gccgcgcgcggtatcgattgcgaccgcatttcccatgtcatcaattttgacatgccggac
accgttgaaaactatactcaccgtattggacggaccggtcgagccggtcgatccggcact
gccgtcagttttgtaaccccggaagaacgctctcagatcaaagacattgagcgggtcatg
cgtatcaaaatcgaacaagataccattgacggattcgatcacaacgccgtcagtaccaaa
atagacactcgcaaacccagccgccgtcctcccaagaatcgcttttccaattcaagaaag
cgtagttccaaccgaggtcgtcgctccgcagcgtag
DBGET
integrated database retrieval system
