Pseudodesulfovibrio nedwellii: SYK_07510
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Entry
SYK_07510 CDS
T09024
Symbol
recD2
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SYK_07510 (recD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnw03400
]
SYK_07510 (recD2)
Enzymes [BR:
pnw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SYK_07510 (recD2)
DNA repair and recombination proteins [BR:
pnw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SYK_07510 (recD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
SLFN-g3_helicase
PIF1
AAA_22
nSTAND3
UvrD-helicase
PhoH
AAA_23
HHH_2
AAA_28
NPHP3_N
NTPase_1
Helicase_RecD
MeaB
AAA_18
AAA
DNA_pol_lambd_f
DUF7440
AAA_24
5_3_exonuc
AAA_16
AAA_29
NACHT
T2SSE
RsgA_GTPase
ABC_tran
Myosin_head
BicD
TsaE
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
BDQ36391
LinkDB
All DBs
Position
complement(791488..793695)
Genome browser
AA seq
735 aa
AA seq
DB search
MSDDQLSYLSGAEVQTVIYHNKENGYTIARVSVKNEPGQTTIVGTLGELAAGASLDLHGK
WLMHPKFGRQFEVSTFEQTRPATENGVIRFLQSSIKGVGEKTATRLVEEFGIEVLDILDD
DPEKLLKVRGISKKKLVDIIESWGKQREIKNLLVFLQTHNVPTTFAGKIFHLYGAQAERK
LRENPYDLAYEIRGIGFRTADQMAMKLGFDHDCAQRLEAALAYTILTSCERSGHLFLPKP
KLLEDVARMLDTSDIEKLELALYSLEEKKRIRIEDLSEQNISEAVYLMYFYHYENESTQR
LYQLVSHPTPVSRKKIDKTLPRVEETLGFTLSDEQREAVFEACSNKVFIITGGPGTGKTT
ITKAIMLTLKELGLKVKQAAPTGRAAKRMAEATGHPSKTLHRLLQYQPDGGFHYCEDQKL
KADVLVVDEASMVDAQLFVAILRALPHTCRLILVGDVNQLPSVGPGNVLGDLINSHKIPC
AVLTHIFRQAQESFIVVNAHRINNGQFPRQHPSQAPEADFYWIPQENTLKVQKLILDSVC
DRIPKRYGLDPLRDIQVLTPMHKGDVGTQALNIALQKRLNPPGGKRELERKYVTYREGDR
VIQLKNNYDKEVFNGDLGWIIEVDEDAHELLIEFDGNFVHIESSELDELGLAYAVSVHKS
QGSEYPAVVMPIVTQHYMLLQRNLLYTGLTRARELAVLIGSDRAFQIGLNNATAGKRHTH
LDYRIRSIFSENRLY
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgatcaactttcctacttgtctggcgcggaagtgcagacagtcatctatcat
aacaaagaaaacgggtacacgattgcccgtgtgagtgtgaagaatgaacccggccagacg
actatcgtcggtaccttgggtgaactggctgctggtgcgtctttggacttacacggcaaa
tggcttatgcatccgaaatttggtcgtcagtttgaggtctctacatttgaacagacccgt
ccggcgacagagaacggagttatccgtttcctgcaatcttccatcaagggtgtgggggaa
aaaaccgccacaagattggtggaagagttcggcattgaggtgctggatattttagatgac
gacccggaaaaacttcttaaagtgcgcggtatatcaaagaaaaaactcgttgatattatt
gagtcatgggggaagcagcgggagatcaagaaccttctggttttcttacagacacacaat
gttcccaccacatttgcagggaaaatatttcatctttatggtgcacaggcggagcgtaag
ctgcgggaaaatccgtatgatctggcctatgaaattcgagggatcggattccgaacagcg
gaccagatggccatgaagctcggtttcgatcatgattgtgcgcaacggttagaagcggct
ctcgcctataccatactcaccagttgcgagcggagtgggcatttgtttttgcctaagccc
aagttgctggaagacgtggcccggatgctcgacacctctgatattgagaagttagagttg
gctctttattcgttggaagagaaaaagcggatacgcattgaggatttgtcagagcagaac
atttctgaagccgtgtatctgatgtacttctatcattatgaaaatgaatccacacagcga
ctctatcagctcgttagtcatcccacgcccgtcagccgaaaaaagatcgacaagactttg
ccacgagttgaggaaacgctcggttttacgttgtccgatgaacagcgggaagccgtgttt
gaagcatgtagtaataaggttttcattatcactggcggtcccggtacaggtaagacgact
attaccaaggctatcatgctgactttgaaagaactgggtctcaaggttaaacaggccgcg
cctacaggaagagcagccaagcgtatggccgaggcaacgggacatccatccaagacgtta
caccgacttttacaatatcaaccggacggcggttttcattattgtgaagatcaaaaactc
aaggctgacgtactggtcgttgatgaagcgagtatggtggacgctcagttgtttgtggca
atcctgcgcgcactgccgcatacttgccgtttgattcttgtcggtgacgtcaatcagttg
ccaagtgtcgggccgggaaatgttcttggtgatttgattaattcgcacaaaataccgtgt
gctgttttgacccatatttttaggcaggcgcaggaaagtttcattgttgtaaacgctcat
cgtatcaacaatgggcaatttccgcgtcagcatccgagtcaggccccggaagcagatttt
tattggataccacaggaaaatacacttaaggtgcaaaagctgatactcgacagcgtgtgt
gatcgtattcccaaacggtacggtttggacccgcttcgggatatccaggtgcttactccc
atgcacaagggagacgttggtacgcaagcattgaatattgccttgcaaaaacgtctgaac
cctcccggaggaaagcgggaacttgagcgaaagtatgtaacgtatcgtgaaggggatcgc
gtcatccagcttaaaaataattatgacaaggaagtttttaatggcgaccttggatggatt
attgaggtggatgaagatgctcatgaattgcttattgagttcgacggcaattttgtgcac
atcgagtccagtgaattggatgagcttggattggcgtatgctgtgagtgtgcataaatcg
cagggaagtgaatatcccgccgttgttatgcctatcgtgactcagcactatatgttgtta
caacgcaacctgctgtatactggattgacacgagctcgggaactggctgtgctcattggc
tcggatcgagccttccagatcggattgaacaatgctacggcagggaagaggcatactcat
ttggattatcgtattcgatctattttttcagaaaatagattgtattag
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