Pseudodesulfovibrio nedwellii: SYK_07540
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Entry
SYK_07540 CDS
T09024
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03030
DNA replication
pnw03430
Mismatch repair
pnw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SYK_07540
03430 Mismatch repair
SYK_07540
03440 Homologous recombination
SYK_07540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnw03032
]
SYK_07540
03400 DNA repair and recombination proteins [BR:
pnw03400
]
SYK_07540
Enzymes [BR:
pnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SYK_07540
DNA replication proteins [BR:
pnw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SYK_07540
DNA repair and recombination proteins [BR:
pnw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SYK_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
AAA_22
RuvB_N
AAA_5
AAA_14
AAA_30
ResIII
AAA_16
AAA_18
TIP49
TsaE
AAA_19
Rad17
Mg_chelatase
DEAD
DNA_pol3_delta
CCDC53
Motif
Other DBs
NCBI-ProteinID:
BDQ36394
LinkDB
All DBs
Position
complement(794661..796502)
Genome browser
AA seq
613 aa
AA seq
DB search
MSTSNLTAKYRPQTFEDVAGQKAIKSILSRAAAQDKIAPAYLFSGTRGVGKTTIARIFAK
ALNCVNAPTGEPCNECSNCKQITAGVAVDVIEIDGASNRGIDDARRLKEDIGYAPIECRY
KVFIIDEAHMLTKEAFNALLKTLEEPPPRATFILATTEHHKFPATIISRCQHYTFKMLTQ
SELVNHLEKIMNLEGLQFEPGALQIIAKRGAGSVRDSMSLLGQALAMGEDVLKEEDVRGF
LGLAGQDVFFGLMEAMHSRNLVSVGYVLRQVLDQGLDLGFFLRELTNCWRNMFLLRQAGE
EALPLLGLSGEEATSWMDWAGKFEPAHIHACWQMTLDGQRKVMTSLEPALALELLLLNLT
SLPELIRLESVSAQAPASNTPQRPTGGSGGMQGGPGTGYRQGQGGASGNGQRFSQPQASQ
SMQQSRLQAPQQAQQRPQMPSRQTTPQAATARVAEPPASPAAPKEPEPAAVMPSDAAPMA
ETVTPSVSVSVTSSGPKSWKGFLSFVEERNGQAGVKVSMLHLTKGELANNELVVTCRSKT
LCGQLTEKNTFNALESLTKEYFDPGVEVRVETGNIIVPKSDKQLMEDAENNPAVNKIIET
FGAQIISVSARKQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcgaacctcacagcaaagtatcgtccccagacatttgaagacgttgccgga
caaaaagcgattaaatccattctttcccgggcagccgctcaggacaagattgcgcctgcc
tatctcttttcgggcacgcgtggggtgggtaagacgacgattgcccgtatttttgccaag
gcattgaactgtgtgaatgctcccaccggggagccgtgcaatgagtgttcgaattgcaaa
cagatcactgctggtgtggctgtggatgttattgaaatcgatggcgcatccaatcgtggt
attgatgatgctcgtcggttgaaagaagatataggctatgcaccgatagaatgccgttac
aaggttttcatcatcgatgaggcgcacatgctcaccaaagaggcgtttaacgcgcttctc
aagacgttggaagagccgccgccgcgagccacatttattttggcgacaactgagcatcat
aaattcccggcaacaattattagccgttgccagcattatacctttaagatgctgactcag
tccgaactggtgaatcatctagaaaaaataatgaatctggaagggttgcagtttgaaccc
ggcgcattacagatcatcgccaagcgtggagctggaagtgtacgcgactccatgtctttg
ttggggcaggctctcgctatgggtgaagatgtgctcaaggaagaggatgtgcgcggcttt
cttggtctggccggtcaggatgttttcttcggcctgatggaggctatgcactctcgcaat
cttgtttctgtcggatacgtacttcgtcaggtgcttgatcagggacttgatctcggattc
ttcttgcgtgagttgactaactgctggcgtaacatgtttttactcagacaggcgggagaa
gaggctttgccgcttctcggtttgtccggcgaagaagctactagttggatggactgggct
ggaaaattcgaacccgcgcatattcatgcgtgctggcagatgacattggacggtcaacgc
aaggttatgaccagtctggaaccggctttggcgttggaattgttgttgttgaatttgacc
agtcttcccgaattgattcgtcttgaatccgtgtctgcacaggctccggcttccaatacg
cctcagcgtcccactggcggttctggtggaatgcaaggtggtcccggcacaggatatcgg
cagggacagggaggcgcttctggtaatggtcagcgtttttctcagcctcaggcgtcgcag
tccatgcaacaatcccggctgcaggctccacaacaggcacaacaaaggcctcaaatgcca
tctcgccaaacgactccgcaggcagcaactgctcgggtagccgaaccaccggcttctccg
gcagcgccaaaggagcctgagccagcggcggtgatgccgtctgatgctgcgcccatggct
gaaacagtgactccatcggtgtcggtttcagtcacgtcatcaggtcccaaaagttggaaa
ggatttctttcctttgtggaagagcgaaatgggcaggctggtgttaaggtgagcatgttg
cacctgacaaagggtgaacttgcgaataatgagttggtcgtgacgtgtcgttctaagacg
ttatgtggtcaattgacggaaaagaatacgtttaacgcgcttgaatcactcacgaaagaa
tattttgatccaggggttgaggttcgggttgaaacaggcaatattatcgtgcctaaatcg
gataaacaactcatggaagatgccgaaaataatccggccgtcaataaaattattgaaacg
tttggtgctcagattatttcggtaagtgctcgaaaacaataa
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