Pseudodesulfovibrio nedwellii: SYK_11180
Help
Entry
SYK_11180 CDS
T09024
Symbol
selB
Name
(GenBank) selenocysteine-specific translation factor
KO
K03833
selenocysteine-specific elongation factor
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pnw03012
]
SYK_11180 (selB)
Translation factors [BR:
pnw03012
]
Eukaryotic type
Elongation factors
SYK_11180 (selB)
Prokaryotic type
SYK_11180 (selB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
WHD_3rd_SelB
WHD_2nd_SelB
Beta-barrel_SelB
GTP_EFTU_D2
MMR_HSR1
FeoB_N
RsgA_GTPase
GTP_EFTU_D4
SRPRB
Crb2-like_BRCT-like
Motif
Other DBs
NCBI-ProteinID:
BDQ36758
UniProt:
A0ABM8AZ04
LinkDB
All DBs
Position
complement(1178196..1180103)
Genome browser
AA seq
635 aa
AA seq
DB search
MPVIMGTAGHIDHGKTTLIKALTGIDCDRLSEEKKRGITIELGFAFLDLGEGNRLGIVDV
PGHEKFVKNMVAGAAGIDFVVLAIAADEGIMPQTREHLEICQLLGVTTGVVALTKTDMVD
AEWLEMVEEEVASYLEPTFLAGAPIIPVSAHTGDGLDALKDQLRTLMAEFKPRRRSDLFR
LPVDRVFTMKGHGTVVTGTMVSGSISVGDDIILYPAGVETKVRSLQSHGEAVETAQAGRR
TAINLHGLEVDDIRRGDVLARPGSLFPSTVWDIELTVLESSHLPLKHRREIHFHHGAREV
LARVYLLDREDLKPGETCVCQVRFSEPLAAVYGDRIVLRAFSPLRAFAGGRVIGPVGHTI
KRFSDKVELMQQLAAETPEEVAAAQLELAGPVGLTFAQLLTMTNLETKGLEKTLGLLGGQ
QKSVLFDKETRRYAGGQLAASLGESLLVFLKDFHARDSMKPGVQRGELASSWGNDLPPKL
FHFVVERMLKTGEIIAEQELLKLKGHKVSLASDQAKVRETILDAYTKGGGTPPNLKDVLE
PLGMDFKQASGVLKLLQEQGALVRIKGDMYYHKAALDDLQGRIVAFFADNQEMSAPDCKE
ITGLSRKYLIPILEYFDKEKLTVRVGDVRHLRKRS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttatcatgggaacagccggtcatatcgaccatggaaagacaacactcattaaa
gcgcttaccggtattgattgtgatcgattatccgaagagaaaaaacgcggtatcaccata
gaactcggttttgcctttcttgatttgggagaggggaacagactgggtatcgtcgatgtc
cctggccatgaaaaattcgttaagaacatggtggccggtgctgcaggtattgattttgtg
gttttggccattgcagcggatgaaggcatcatgccccagacccgtgagcatttggagatt
tgtcaattgcttggtgtgacaactggcgttgttgctttgaccaagactgacatggtggat
gcggaatggttggagatggtggaagaagaagttgcgtcttatcttgaaccaacatttctt
gctggcgcaccgattataccggtatccgcgcataccggtgacggattggatgcgctcaag
gatcagttgcggaccttgatggcagaattcaagccccgtcgtcgttccgatctatttcgt
ctgcccgtggatcgtgtgttcaccatgaaaggacacggtaccgtggtcaccgggactatg
gtttccggttccatttctgttggtgacgatattattctttatccagccggagtagagacc
aaagtgcgtagtttgcaatcgcatggcgaggctgtggagacagctcaggccggacgacgg
acggccatcaatttgcatggcctggaagtggacgatatcaggcggggagatgtgttggct
cgcccggggtcattgttcccttcaactgtgtgggacatcgagttaaccgttctggaatct
tcacatctgccgctcaagcatcggcgggaaatacattttcatcacggtgcgcgtgaagtg
ttggctcgtgtttatctgttggatcgagaagatctgaaacccggtgaaacttgcgtctgt
caggtccgattttcggaaccgttggccgcagtatatggtgatcgtatcgtgttgcgcgca
ttttctccgctccgcgcttttgcaggtggtcgggttataggaccagtcgggcatactata
aaacgattctcggataaggtggagcttatgcagcagcttgctgccgagacgcccgaagag
gtggcagcagcccaattggaattagcaggtcctgtcggattgactttcgcacaattgctg
accatgaccaatcttgaaacaaaggggttggagaagactttgggactacttggtggtcag
cagaagtctgtgttgtttgacaaggaaacgcgtcggtatgccggtgggcaactggcggcg
tcacttggtgagagtctgcttgtctttttgaaggattttcatgccagggattctatgaaa
cccggtgtgcaacgaggtgaactggcttcctcttggggcaatgatttgcctcccaagttg
tttcattttgtggttgaacggatgcttaagactggtgaaatcattgccgagcaggaattg
ctcaagttgaaagggcataaagtttcgttggcttcagatcaggcaaaagtccgtgaaacc
atccttgatgcctatactaaaggaggcggtaccccgcccaatctcaaggatgtacttgaa
ccgcttggcatggactttaagcaggcttctggtgttttgaagttgttgcaggagcaagga
gcgttggtacgcatcaaaggtgacatgtattatcataaggcggccttggatgaccttcaa
ggccggatagttgctttttttgcggataatcaagaaatgtccgcccctgactgcaaggag
ataacagggctttcgcgtaagtatcttattccgatattggagtattttgataaagagaaa
ttgacagtccgcgttggagacgtacgtcatctccgcaaacgttcttga
DBGET
integrated database retrieval system
