Pseudodesulfovibrio nedwellii: SYK_12430
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Entry
SYK_12430 CDS
T09024
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnw03016
]
SYK_12430
Enzymes [BR:
pnw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SYK_12430
Transfer RNA biogenesis [BR:
pnw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SYK_12430
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BDQ36883
LinkDB
All DBs
Position
1328515..1330512
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AA seq
665 aa
AA seq
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MHGDQPQLAWVLEEASSKLRLLTINKREMKLPAARLLPWYGPTLSAELSRQDIQNTLNEH
QAARGEILAGLDVMELWDLAQGEMESAPLSWFADLLWEDATPDQLAALGCAMLQAKTHFK
FRPPNFEIWSAEKVALKMQQKAEEKAREAVTSAGQTLLQTLWAAYSQGRTPKLPAMNPEL
SASLEQILKHKVGDSLDETERKVWTAISKGLPDQQHLALLLAQTWGVLPRHHNYHLDEAD
FAWGDSWSESYTNEINEIEKRFSNQAATAEIDDFISIDGITTRDIDDAFRIEKTDTGYTL
SIALARPDEHWEFGSPLDKAVLYRATSLYLPEGTSHMMPEQFGTGLYSLIQGETRPAMIT
DFSLNNEGKLLSVTPRTAWITVKANITYESADTAIANGTDESLVLAHQLAEKLIERRIAS
GACVIRKPEPIVTVSGEGAQSSVEITLKEPSPRSELVISEFMVLANSGLALWAKENNVPL
LHRTQDIALPQESAGIFTEPAAILRAVKLLLPPTLETNPKRHAALGVPAYAPITSPLRRY
TDFINISQVCTYLTNGTPRLDKEALKHLIIHLRMRIQAVSAVQRFRPRYWKLVYLAKQRK
QFQSAVLVEEAGPMATLAMPHLQVNVRAPKKMLGDKLYPGQQFQINFSRIDPLTNEIRLG
EALEE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcacggagaccagccacaattagcttgggtgctggaagaagcatccagcaaactccgc
ctgctcaccatcaacaaacgggaaatgaaactcccggcagcacgccttttgccatggtat
ggaccaaccctgtctgcggaactctcccgacaggatatccagaatacactcaatgaacac
caggcagcccgcggagaaatcctggcaggcctcgatgttatggaactctgggaccttgct
cagggagaaatggaatccgccccactgtcatggtttgccgatctgctctgggaagacgca
actcccgatcaattggctgcattgggttgtgccatgcttcaagccaaaacgcatttcaag
ttccggcccccgaatttcgaaatatggtctgcggaaaaggttgcattgaaaatgcaacaa
aaagccgaggaaaaggctcgcgaagccgtcacttccgccggtcaaactctccttcagacg
ctctgggcggcatatagtcagggccgcacgcccaagctcccggccatgaacccggaactc
tctgccagcctcgaacaaatactcaagcacaaggtcggcgactctctcgacgaaaccgaa
cgcaaagtatggactgccataagcaagggattgcccgaccaacagcaccttgctcttctc
cttgctcaaacatggggagtcttaccacgccaccacaactatcatcttgacgaagccgat
tttgcatggggcgacagctggtctgaatcatacaccaatgaaatcaatgaaatagaaaaa
cgcttttccaatcaggccgcaactgctgaaattgacgatttcatttccatagatggcata
accacccgcgacatcgacgatgcattccgtatagaaaaaaccgacacaggatacaccctg
tccatcgctttggcccgtcctgatgagcactgggaattcggttccccgctggacaaggca
gtgttataccgtgcgaccagtctgtacctgcccgaaggcaccagtcacatgatgcccgaa
caattcggcacaggcctctacagcctgattcaaggcgaaacacgccctgccatgattaca
gatttttccctgaacaacgaaggaaaactactctcagtcacgccgcgtaccgcctggatc
acggtaaaagccaacattacctatgagagtgctgacacagccattgcaaacggcactgat
gaatcacttgttcttgcgcaccaattggcagaaaaacttattgaacgtcgtatagcctcc
ggcgcatgtgtcatccgcaaaccggaacctatagtcactgtatcgggtgaaggcgcacaa
tcttctgtcgaaataaccctcaaagaaccaagcccgcgttcagaattggttatcagtgaa
ttcatggttctggctaactccggccttgccctgtgggccaaagagaataacgtaccgctt
ctgcatcgcacgcaggacatcgccctgccgcaagaatccgcaggcatctttaccgaacca
gccgctatcctgcgcgccgtaaaattacttttgcctccaacgctggaaaccaatcccaaa
cgccatgcggcccttggcgtcccggcatatgcccccataacctcacccctgcgccgctat
acggactttatcaacatatctcaggtgtgtacctatctaacaaatggtacccctcgactg
gataaggaagcgttgaagcatctcatcattcacttaagaatgcgcatccaagcggtgagt
gctgttcagcgattccggccccggtactggaaactcgtatacctcgccaaacaacgaaaa
cagttccaatccgccgtactcgtggaagaagccggccctatggcgacactggccatgccc
catttgcaggtcaacgtacgtgccccgaaaaagatgctcggagacaaactctatccgggc
caacaattccaaatcaatttctcacgcatcgacccattgaccaacgaaatcagactgggc
gaagcacttgaggaatag
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