Pseudodesulfovibrio nedwellii: SYK_17800
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Entry
SYK_17800 CDS
T09024
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw00470
D-Amino acid metabolism
pnw00550
Peptidoglycan biosynthesis
pnw01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SYK_17800 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SYK_17800 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pnw01011
]
SYK_17800 (murD)
Enzymes [BR:
pnw01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
SYK_17800 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pnw01011
]
Precursor biosynthesis
Amino acid ligase
SYK_17800 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
AlaDh_PNT_C
2-Hacid_dh_C
Shikimate_DH
FAD_binding_3
TrkA_N
NAD_binding_7
Pyr_redox
YjeF_N
Pyr_redox_2
NAD_binding_8
F420_oxidored
Pyr_redox_3
AdoHcyase_NAD
3HCDH_N
HI0933_like
DAO
HcgC
XdhC_C
Glyco_hydro_77
Motif
Other DBs
NCBI-ProteinID:
BDQ37420
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All DBs
Position
1944404..1945708
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AA seq
434 aa
AA seq
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MNRIVRNFIDQHILSGKQAVVVGVGKSGLAAARLLDVLGANVRVVDRNEDVTEDTLGELK
GKVELVTGPHKKRHFSDADIIVFSPGVPVKKLAPVLEGIAPHTMVSELEFASWFIEAPML
AVTGSNGKTTTTTLISDILEQAGRTVFTGGNIGVPLCEYLLDMEPAEIIVLEVSSFQLQN
CRLFKPHVGVFLNFAANHLDYHEDMNEYLEAKLTLFNRMTGEDIALMHESMRDIMKDRSF
TNAHVQWFDATDRFDAPHLPGEHNRSNVEAAWQAVKQFGVTKEQAAKTILNFKPLAHRIE
PVGEKRGVLYVNDSKATTLEAALAAVRSFDRPVRILMGGVWKGGDVVAFAKGIKGSVVHV
GLFGGAREELEPELSKSFTVTWDETLEKAIKRQTAKADAGDVILLSPATASFDQYNGMAQ
RGADFKRVVGGLDD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcgtatcgtccgcaacttcattgaccagcacatcctctccggcaaacaagccgta
gtggttggcgtgggcaaatcaggtctggccgcagcccgtcttctcgacgtgctgggtgcc
aacgtgcgcgtggtggacagaaatgaagatgtgaccgaagacactctgggtgaactcaaa
gggaaagtggaactcgtcaccggaccgcataaaaagagacacttctcagacgcggacatc
atagtgttctcccccggtgtgccggtaaaaaaacttgccccggtactggaaggcattgct
ccgcacaccatggtctccgaactggaatttgcttcgtggttcatcgaggctcccatgttg
gctgtcaccggttccaacggcaaaaccacgacgaccacactcatttccgacattctggaa
caggctggtcgcacggtcttcacgggcggtaacatcggcgtccccctgtgcgaatatctg
ttagacatggaacccgccgaaatcatcgtgcttgaagtttccagcttccagctccaaaac
tgccgtctgttcaaaccccatgtcggcgtattcctaaattttgcggccaaccacctcgac
taccatgaggacatgaacgaataccttgaggccaagctgacgctgttcaaccgcatgacc
ggcgaagacatcgccctcatgcacgaatccatgcgtgacatcatgaaggaccgctccttc
accaatgcccatgtccaatggttcgacgcaacagaccgcttcgacgccccccatcttccc
ggtgaacacaaccgctccaacgtggaagccgcatggcaggcagtgaagcagttcggcgta
accaaagaacaggctgccaaaaccatcctcaatttcaaaccgctggctcaccgcatcgaa
cctgtgggtgagaaaagaggcgtcctgtacgtcaacgattccaaagccaccacgctagaa
gcagctttagccgcagtccgctctttcgatcgtccggtccgcattcttatgggcggtgtt
tggaaaggaggcgatgtggtcgcttttgccaagggcattaaaggttcggttgttcatgta
ggtctgttcggcggagccagagaagaactggagccagaactgtccaaatctttcaccgtg
acatgggatgagacgctggaaaaagcgatcaaacggcaaactgccaaagccgatgctggt
gatgtcatcctgctttccccggccacggccagcttcgatcagtacaacggaatggcccag
cgcggcgcggatttcaaacgtgtagttggaggtctcgatgactaa
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