KEGG   Pseudodesulfovibrio nedwellii: SYK_19760
Entry
SYK_19760         CDS       T09024                                 
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
pnw  Pseudodesulfovibrio nedwellii
Pathway
pnw03030  DNA replication
pnw03430  Mismatch repair
pnw03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pnw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SYK_19760
   03430 Mismatch repair
    SYK_19760
   03440 Homologous recombination
    SYK_19760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pnw03032]
    SYK_19760
   03400 DNA repair and recombination proteins [BR:pnw03400]
    SYK_19760
Enzymes [BR:pnw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SYK_19760
DNA replication proteins [BR:pnw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SYK_19760
DNA repair and recombination proteins [BR:pnw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SYK_19760
SSDB
Motif
Pfam: RNase_T Rv2179c-like DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: BDQ37616
UniProt: A0ABN6S320
LinkDB
Position
complement(2149128..2149670)
AA seq 180 aa
MPMHIVEDVRFVAIDFETADPKRDSACAVGIVVVDKGEIVERDYRLIRPPRKKFNPFCVR
VHGLHWEDVCDEPSFGDLWPELEPLFEDADFIVAHNAPFDKSVLHTCCKESGRAAPAQPF
LCTVQLSRTTWELSSNKLPSVCDYLGITLNHHNAASDAEACALIAVNGLRANPQFMDKVL
NT seq 543 nt   +upstreamnt  +downstreamnt
atgcctatgcacattgttgaagacgtccgatttgttgctatagatttcgaaaccgctgat
cccaaacgagattccgcctgcgccgtgggtattgtcgtggtggacaaaggcgaaatcgtt
gagcgggattaccgtctcatccgtccgccaaggaagaaattcaacccgttctgcgtcagg
gtgcacgggttgcattgggaagacgtatgtgacgagccgagtttcggtgacttgtggccg
gaattggagccgttatttgaggatgcggattttattgtggcacacaacgctccgtttgat
aaatcggttctgcatacctgttgcaaggaatcgggcagggctgcaccggcacaaccgttt
ctctgtaccgtgcaactgtctcggacaacgtgggagctgtcgtccaacaagctgcccagc
gtctgcgattatcttggtatcacactcaatcaccacaacgcggcttccgatgctgaggcc
tgtgccctcatcgcggtcaacggcttgcgtgcaaatccgcagttcatggataaagttctc
tga

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