Pseudodesulfovibrio nedwellii: SYK_19900
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Entry
SYK_19900 CDS
T09024
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnw03016
]
SYK_19900
Enzymes [BR:
pnw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SYK_19900
Transfer RNA biogenesis [BR:
pnw03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SYK_19900
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
HVSL
Motif
Other DBs
NCBI-ProteinID:
BDQ37630
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All DBs
Position
2167367..2167924
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AA seq
185 aa
AA seq
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MPRLFIGLGLPDSYQQTVKPFTDNLNTGLDSSVRWIRPGNWHLTLKFLGNTDEKDIPTIV
DALSSIHFPQFPMQAGDAGAFPNVNRPREIWLGLKQGAQQCADLADMIEDALTNMGVARE
KKRFRPHLTIGWIKKTGQDDWKSILTTANQDWPIFTTERFTLWQSELKPTGAVHTVLNNF
SLRTD
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcctctttatcggccttgggctgccagactcttatcaacaaaccgtgaagccc
ttcacagacaatctcaacacaggattggactcatccgtgcgctggattcgccccggcaac
tggcatctaacgcttaagtttctggggaacaccgacgaaaaggatattcccactatcgtt
gatgcgctttcatccattcatttcccacaatttcccatgcaggcaggagacgcaggggcc
tttccaaatgtaaacagacctcgtgagatctggctgggactcaagcaaggggcgcaacaa
tgcgctgatctggcagacatgatcgaagacgctctgacgaacatgggcgtagctcgggaa
aagaaacgatttcgcccccacctgactatcggatggatcaaaaaaacggggcaggacgac
tggaaatccattctcaccacagcgaatcaagactggcctattttcacgacagaacggttc
accctatggcagagtgaactcaaaccgaccggcgcggtgcatactgtgctgaataatttc
tctttgagaactgactaa
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