Pseudodesulfovibrio nedwellii: SYK_20610
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Entry
SYK_20610 CDS
T09024
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYK_20610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnw03019
]
SYK_20610
03009 Ribosome biogenesis [BR:
pnw03009
]
SYK_20610
Enzymes [BR:
pnw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SYK_20610
Messenger RNA biogenesis [BR:
pnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYK_20610
Ribosome biogenesis [BR:
pnw03009
]
Prokaryotic type
rRNA processing factors
SYK_20610
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
AF0772_C
ZEB2_helical
CHP02642
Motif
Other DBs
NCBI-ProteinID:
BDQ37701
UniProt:
A0ABN6S792
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All DBs
Position
2237387..2238856
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AA seq
489 aa
AA seq
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MPNKKKRQKMFISVLPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQ
AAFINYGAERNGFLQIDEVHPEYYTGNFTQKKGARYPLMQKVLKAGQEVLVQVVKEPTGK
KGAFLTSYLSLPGRSFVYTVGRSQMGVSRKIENEKERTRLKKALESFETTEGVGLIARTA
AVGQSKTALERDFKYLNRLWTDIRSNAQKEKAPVIVYKELGLAARAVRDYLTSDVTEVWV
DDKETYDQISKFVKLAFPRKNNLVRLHDENDLSLLERFNLVKQVEEIYTREASMPSGGRL
VFDATEALTAVDINSGKIGGERNFQKMALKTNVEAAKEIARQLRLRDIGGQVVIDFIEMK
NPKDCREVEKVMRAELKNDRARTDVSRISSFGLMELVRQRLGSSAIAISTEACPCCKGTG
IRRNMEWQALQALKEIHRDIRKPGMDRVEHDCEEELAIYLLNTKRGILTDLENRYGKEIH
IDLEYEYDD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagaagaaacggcagaagatgttcatctctgtcctcccaggagaacaggtt
gaagtcgtcattgccgaagaaggcaaagtcaacgaatactacgtcgagatggtgcaccag
gctaaaaccaagggcaacatctacaaaggctacattcacaatatagacaacggacttcaa
gccgcgttcatcaactacggtgccgaacgcaatggttttctccagatcgacgaagtccac
cccgaatactacacgggcaatttcactcaaaagaaaggcgcgcgctatccgctcatgcag
aaagtgcttaaggccggtcaggaagtgcttgttcaggtggtcaaagaacccactggcaaa
aaaggcgcattcctcacctcttatctttccctacccggacgcagtttcgtctacaccgtg
ggccgctcccaaatgggtgtttcccgcaaaattgaaaatgaaaaggaacggacgcgcctg
aaaaaggccctcgaatcctttgaaactactgaaggtgtgggactcatcgccagaactgca
gccgtgggacaatccaagactgcacttgagcgcgatttcaaatacctaaaccgactctgg
acagatatccggtccaatgcccaaaaggaaaaagctccagtcatcgtttacaaagagctg
ggacttgctgcacgcgccgtgcgcgactacctgacttctgatgtcactgaagtctgggtt
gacgacaaagaaacctacgaccagatcagcaaatttgttaagctcgccttcccgcgtaaa
aacaatctggttcgtctgcatgacgaaaacgatctttccctgctggaacgcttcaacctc
gtaaaacaggtggaagaaatttatacgcgcgaagcatccatgccgtccggtggtcgtctg
gtcttcgacgccacagaagccctgactgccgtagacatcaactccggcaagatcggggga
gaacggaacttccaaaaaatggccctcaagacgaatgtcgaggccgccaaggaaatcgcc
cgccagctcagactgcgcgacatcggcggtcaggtggttattgacttcatcgagatgaag
aatcccaaagactgccgtgaagtagaaaaggtcatgcgcgccgaactaaaaaacgaccgg
gcccgcacagacgtcagccgcatctcatctttcggacttatggagctggttcgtcagcgc
cttgggtcctcggccatagccatctccaccgaagcatgtccctgctgtaagggcacaggc
attcgccgtaacatggaatggcaagctcttcaggctctcaaggaaatccatagggacatt
cgtaaacccggcatggatcgggtcgagcacgattgcgaagaagaactcgcaatttacctg
ctcaacacaaaacgaggcatcctgaccgacctggaaaacaggtatggtaaagaaatccat
attgatcttgaatacgaatacgacgattaa
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